FMO12582.5prime Sequence
1080 bp (944 high quality bases) assembled on 2012-10-30
> FMO12582.5prime
GTCGACATGGATGATGCTACCTCCCAAAACTCGGCTGCAACGCCCATGAC
ACGGGAGAACATTCCGTTGCTGAATCGTCAGCGAAATCGCTGGTATCTCT
TTAGCTGCTGGCGAAAATGGTTCCGGCCACGGGAGCTGAGAGCCCGCACC
GTAAATCTCGGACGGGTCAATACGGAGAAGTTCCCACCGAACGAGATCCG
GAATCAGAAGTACAACTTCATCACCTTCCTGCCGCTGGTGCTGTTCGAGC
AGTTTCGCTTCTTCCTCAACTTGTACTTCCTGCTGATGGCGCTGTCGCAG
TTCATTCCGGACATCCGGATCGGTTACCCGTACACCTACTGGGGTCCGCT
CGGCTTCGTGCTAATGGTCACCATTTGCCGAGAGGCGGTCGACGATCTGC
GTCGGCATCAGCGGGATCACGAGGTAAACTCGCAGAAGTATAAGAGACTG
TCGTCCACCAACATCAGCGGCTACGAAATGGTTCCCAGCTCCAAGCTGAA
GGTCGGTGACGTCATAATCGTGGAAAAGAACGAGCGCGTGCCAGCGGATC
TGATCCTGCTGCGCACCAGCGATCGGAGCGGATCGGTCTTTGTTCGTACG
GACCAACTTGATGGCGAGACGGACTGGAAACCACGTCTCGCCGTTCCGTA
TACTCAAAAACTCAGTCGAGATTCGGAGCTACATAGCATCGATGCCAGTT
TTTACGTGGAGAAGCCACAGAACGACATTCACAGCTTCATCGCCACCTTC
TGCATGGCAGACGGCAGCGAAGACACCGGTCTCAGTGTGGAGAATACCCT
GTGGGCCAACACCGTCGTAGCCGCAGGACAGCCACAGGAATTGTCATATA
TACTGGCTGCGAAACTCGCAGCGTGATGAATAACTCACAGCCCACGTCCA
AAGTTGGACTGCTAGACATGAAGATTACGGATTGACTAAGTTCTGTTCTG
CGCCGTGCTTGGACTGTCGCTAGTCATGATGATGCTAGGTTTCGCGGCCC
TTGCATAATACATGTCCGCTCGTCTTCTCTTTCCCTACATCATCATCAGT
CGGCGTGTCATTTGACATGGTAAAGCCTTC
FMO12582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31729-RA | 4167 | CG31729-RA | 299..1386 | 5..1075 | 4885 | 97.5 | Plus |
| CG31729-RD | 3999 | CG31729-RD | 381..1370 | 103..1075 | 4395 | 97.3 | Plus |
| CG31729-RC | 3963 | CG31729-RC | 193..1182 | 103..1075 | 4395 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13297617..13298456 | 103..940 | 4040 | 99.3 | Plus |
| 2L | 23513712 | 2L | 13296646..13296745 | 5..104 | 500 | 100 | Plus |
| 2L | 23513712 | 2L | 13298559..13298605 | 940..986 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 484..532 | 238..286 | 110 | 69.4 | Plus |
FMO12582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:06 Download gff for
FMO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RA | 294..1303 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:05 Download gff for
FMO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RA | 294..1303 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:38 Download gff for
FMO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RA | 295..1304 | 1..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:38 Download gff for
FMO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13296642..13296745 | 1..104 | 97 | -> | Plus |
| 2L | 13297619..13298456 | 105..939 | 99 | -> | Plus |
| 2L | 13298559..13298626 | 940..1003 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:05 Download gff for
FMO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13296642..13296745 | 1..104 | 97 | -> | Plus |
| arm_2L | 13297619..13298456 | 105..939 | 99 | -> | Plus |
| arm_2L | 13298559..13298626 | 940..1003 | 92 | | Plus |
