FMO12583.5prime Sequence
1105 bp (995 high quality bases) assembled on 2012-10-30
> FMO12583.5prime
GTCGACATGGCCCCAGTTCAGAAAATAAATGTTTTTGGTGAAGCCGATAC
TGCAGTATCCTCCAAGGATGTGTATTGCATTTGTCGCCAGAGCCACATCA
ATGGATTTATGATATGCTGTGACAATTGCAACGAGTGGTTCCATGGAGAT
TGCATCGGATTGCCGGCAAATATCGGGGAACAGCACGACACCTACTACTG
CACCGAGTGTTTTCGCAAAAATCCACTATTAAAGTGCACCTATAAGAAGA
GTCCATCCACCACAGGAGTTCCAAAAACTCCAAAAACTCCAAAAACTCCA
AAAACTCCAAAAAATCCAAAAACTCCAAAGACTCCAAAAAATTCAAAAAC
TCCAAAAACAGCCAGGATTATCAATTCAATCGGTGTCAGGCAGAATCCAC
GCAGGAGATCCACGTTCGTCCAGGAGCGTCCTTCAGAAGTACCTAATCCA
AGCAGACAATCCACGAAGTTACAGAAAGCAGTCAATTATGAAAATGCTAC
TGAAGAGCCCACAGAAGACGCTGAAAAGGTGGATCAAAAACCAAAAAAGA
CTGCGAAGAAAAAGAATCCAAAGCCGGAGGATAAAGTCACAGACGATGCT
CAAAAACCAGCAGTTGAAAAGCTCTTCGAATCGAAGGGAACACAATGCAA
CATGTTTAGGGATTGGTCGAAGTATGTTCCTCCCGAAAACTCCAAGAAGA
GGGGCACCTGCTTCACAGTCTTTTGCCAGCAATTGGCACGATCCTGTTCT
AGATACTGTTGCGATGAGTGCGGCAACTTCACCGCAATCACAAACGTATT
CGCATTAGCCTTTTACCCAATATGCCAGCAATGAAAGTGGCAATGGGACA
CGTTGGGTTTATTGCTTGGCATGACTTAACAAATATCAGAAGTCAAACAA
AATTCAGAGGCTTCTGAGTCAAAACGAAACCAGGCCAAAGTTTAAAAAAC
CAAAATCGGAGGAAGGAAATCGAGATATCGTAGTCGAGCAGTAGCTGCAA
AGAAGCCCAGATGTTTCCGACTGCGCTAAAGCCGGAGCTTCAAGAAAGAA
CTGCTTCATCTAGCCTCTTAGAAGCCTAAGGAGTAGTGAGATCTCCGAAT
CTGAA
FMO12583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3347-RC | 1908 | CG3347-RC | 97..1176 | 7..1075 | 4865 | 97.7 | Plus |
| CG3347-RB | 2192 | CG3347-RB | 381..1460 | 7..1075 | 4865 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3270044..3270787 | 114..856 | 3670 | 99.9 | Plus |
| 2L | 23513712 | 2L | 3270860..3271014 | 871..1018 | 400 | 92.9 | Plus |
| 2L | 23513712 | 2L | 3269913..3269986 | 40..113 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:13 has no hits.
FMO12583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:07 Download gff for
FMO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3347-RB | 374..1421 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:09 Download gff for
FMO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3347-RB | 374..1421 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:41 Download gff for
FMO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3347-RB | 374..1421 | 1..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:41 Download gff for
FMO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3269810..3269849 | 1..39 | 92 | -> | Plus |
| 2L | 3269913..3269986 | 40..113 | 100 | -> | Plus |
| 2L | 3270044..3270794 | 114..864 | 99 | -> | Plus |
| 2L | 3270853..3271035 | 865..1034 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:09 Download gff for
FMO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3269810..3269849 | 1..39 | 92 | -> | Plus |
| arm_2L | 3269913..3269986 | 40..113 | 100 | -> | Plus |
| arm_2L | 3270044..3270794 | 114..864 | 99 | -> | Plus |
| arm_2L | 3270853..3271035 | 865..1034 | 91 | | Plus |
