FMO12584.5prime Sequence
1080 bp (992 high quality bases) assembled on 2012-10-30
> FMO12584.5prime
GTCGACATGTCTGTGAGACTGCTGACCGTGCGACTGATCAAACATGGTCG
CTACATTTTGCGCAGCTATTGTAAACGTGATATACACGCCAACATTTTGG
ACCAGAATCAATTGAAGACAAGAAGCAAGCGAGGCTTTCCCCTACCCTCC
ACCGCTGCCAATGTGCTGCGGACAACGCCCCAGCAGGCGGCCAAATCGGT
GGTCAATGTAGTGCCCCGCACCATCAACTCCCCGTCGGGATCACCGTTTA
ATGGCAGCGGCAGTAGCCCCACCAGCAGCAGTGGAATCTTCCGAGTGGGC
CAGCATGCGCGCAAATTGTTCATCGACAACATCCTCAGCCGGGTGACCAC
CACCTACTCGGAGGATCTGCGCCAGCGCGCTACCCGCAAGCTATTCTTTG
GCGATTCAGCGCCCTTCTTCGCCCTGATTGGCGTTAGTCTGGCCTCCGGA
TCGGGTGTGCTCAGCAAGGAGGATGAACTGGAGGGCGTGTGCTGGGAGAT
TCGGGAGGCAGCTAGCCGGCTGCAGAACGCCTGGAATCACGACGAGATCT
CCGATACGCTAGACAGCAAGTTCACCATCGATGACTTGGAAATCGGTCCG
CCCATAGCCAAAGGTTGTGCCGCTGTCGTCTATGCAGCGGATTTCAAGAA
AGATGTTGCCTCGGATGGTGCATCCCTGCATACCGATGCGCAGCCGCAGG
CAACGCCAGCCTTTGCGCCGAATAGCTGGAGTACCCACGAGATGATGTCG
CCGCTGCAGAACATGTCGCGCTTTGTTCACAACTTTGGCGGCTCTGTGGA
CAACGTCTTCCACTACAGCCAGCCATCTGCGGCCAGTGATTTCGTGGCGC
CCAGTCGAGGGAACAGGACCAGCGGCACCACGAGCACAGCAGCATCAGAT
CAGAACAGAGCAGCATCAGAACCAGGAGCCCAGCAGCAGTGCCTTCATGT
GACTTCTCCAGCGAATTCAACATCAACAGCTCTGTGGGAACAGTTATCCA
CTGGCCCTCAAAATGATGTCAACTACGACATTCAGAGCACCCTTTTGTCA
ACCTGCCGTGCCATGTTACAAGAACCGTAC
FMO12584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pink1-RI | 2411 | CG4523-RI | 141..1211 | 7..1072 | 4940 | 98 | Plus |
| Pink1-RH | 2894 | CG4523-RH | 628..1698 | 7..1072 | 4940 | 98 | Plus |
| Pink1-RG | 2921 | CG4523-RG | 655..1725 | 7..1072 | 4940 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6684785..6685566 | 171..947 | 3665 | 99.1 | Plus |
| X | 23542271 | X | 6684557..6684721 | 7..171 | 825 | 100 | Plus |
| X | 23542271 | X | 6685634..6685722 | 951..1039 | 260 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:20 has no hits.
FMO12584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:08 Download gff for
FMO12584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pink1-RC | 616..1672 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:14 Download gff for
FMO12584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pink1-RF | 596..1652 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:45 Download gff for
FMO12584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pink1-RG | 647..1703 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:45 Download gff for
FMO12584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6684549..6684721 | 1..171 | 97 | -> | Plus |
| X | 6684786..6685571 | 172..951 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:14 Download gff for
FMO12584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6578582..6578754 | 1..171 | 97 | -> | Plus |
| arm_X | 6578819..6579604 | 172..951 | 99 | -> | Plus |
