FMO12586.5prime Sequence
1121 bp (994 high quality bases) assembled on 2012-10-30
> FMO12586.5prime
GTCGACATGCCACCACTCCAATCACTTGTGACCGCCCCCCGGCTATGCAA
ATTAGCCATTGCAGCGATTTTGCTAATTCTCCAGCTAAACGCTAGTGTTG
CGCTGCTGCTCAAGTGTCCGTTGCACCAGTTGCAGCTGCAGAAGATCGTC
GGATTCCGGCCACCGCTGGAGTATCTGAATGCGGATAATCGGATCTACGG
ACCGGAAATGGTGAGCAACTTCAAGACTCGCAACGGCCAACAGGAACTTC
CGGTCAGCCAGGTGTGCTGGCGCATCTGCAACGAGGATCCCGATTGCATT
GCCTATGTCCATCTGCTGGACACGGACGAGTGCCATGGCTACTCCTACTT
CGAGCGAACCTCGCGCTATCTGGCCATTTCGGGTGAACTGCCTCTGGTGG
CAGACGGCGAGGCCGTCTTCTACGAAAAGACCTGCCTCCGAGTTCCCGAT
GCGTGCCGTGGGCGTCTCTGGGCACTGACCAAAATCCCCGGCAGCACGCT
GGTCTACCACAGCAAGAAGACCATTTCGACGCTGGTCACGCGGCGTGAGT
GCGCCGAGCGCTGCTTCTTCGAAACCCAGTTCCGATGCCTCTCCGCCTCC
TTTGCGCCCTCCTATCGGAACAATCGTGAGCGCTTCCGCGGCGAGGCGGG
TCCTGGCCAGCGTCCGTCTCCCCGCCTCGGCAGATGTATGCTGAGCGACA
GGGACAAGACCGTCCAGCCGGACGCCTTTCGCGCGGCTCCATACGACGAG
GAGTACATGGAGAACCAGTGCCACGAACGGGCCATCGAAAGTGACAACTG
TTCCTACGAGCTGTACGCCAACAGCAGTTTCATCTATGCGGAGGCCAGGT
ATTTGGGCCTCTCCCAAAAGAGTGTCAGGCGATGTGCTCCCACGAGGCGA
AGTTCTACTGCCAGGGTGTCTCCTTCTACTATGTAAACCAACTCTCGCTG
TCCGAGTGTCCCCTCCACTCGGAGGACATTGTATCCCTGGGTCCGCGAAG
CCTGAAGCTCCGTGAAAACCTCGGTGTACATGCGGGAGGTCAGGTGCCTG
AATGTCCGGGTTTGCACCCGCGATGGAATGACCATAAGTACATCCAAGGA
CTGTCGTCGCAGATTCTATGC
FMO12586.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17111-RB | 2959 | CG17111-RB | 519..1621 | 7..1103 | 5220 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23065538..23065883 | 442..97 | 1715 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23064565..23064802 | 869..632 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 23065279..23065470 | 632..441 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 23064282..23064464 | 1054..871 | 795 | 96.7 | Minus |
| 3R | 32079331 | 3R | 23066651..23066741 | 97..7 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:57 has no hits.
FMO12586.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:17 Download gff for
FMO12586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17111-RB | 515..1629 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:16 Download gff for
FMO12586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17111-RB | 515..1629 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:37 Download gff for
FMO12586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17111-RB | 515..1629 | 1..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:37 Download gff for
FMO12586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23066651..23066743 | 1..97 | 95 | | Minus |
| 3R | 23064282..23064462 | 873..1054 | 96 | <- | Minus |
| 3R | 23064561..23064801 | 633..872 | 99 | <- | Minus |
| 3R | 23065279..23065468 | 443..632 | 100 | <- | Minus |
| 3R | 23065538..23065882 | 98..442 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:16 Download gff for
FMO12586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18890004..18890184 | 873..1054 | 96 | <- | Minus |
| arm_3R | 18890283..18890523 | 633..872 | 99 | <- | Minus |
| arm_3R | 18891001..18891190 | 443..632 | 100 | <- | Minus |
| arm_3R | 18891260..18891604 | 98..442 | 99 | <- | Minus |
| arm_3R | 18892373..18892465 | 1..97 | 95 | | Minus |
