Clone FMO12587 Report

Search the DGRC for FMO12587

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7627-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12587.5prime Sequence

1082 bp (969 high quality bases) assembled on 2012-10-30

> FMO12587.5prime
GTCGACATGCAGTCGCTGAAAACGGCAGATTTGCCGGAAAATCCCCGGGA
ACATTGCAATTTTATTTCGGCAGCATGTTTTTGGTACACCATGCCGACTT
TTATCAAGGGTCGGAAACGCACATTGGATACCAAGGATCTTTACAGAGCC
TTAAAAGAGCACAAATCTGAGACTCTGGGGAACAAATTGTGCGCTTCCTG
GGAATTGGAACTTGAGAAGACCAAAGGAAAGCCCAATTTGTTGAGAGCCC
TTCTGCGAGTTTTTGGCTGGTACTTCGCACTGCTTGGCCTGGTGCTTTTC
CTGCTGGAATTGGGTCTTCGAACGCTTCAGCCAATCTTCCTGCTGAAACT
CATCGCCTACTACACACATGGCTCGGAATCGATTGAATCGGCCTATTACT
ATGCAGCTGGAGTGATCCTGTGCAGTGCCCTCAATGTCATTATAATGCAT
CCCTATATGCTAGGCACAATGCATGTGGGACTCAAGATGCGCGTTGGTAT
GTGCAGCATGATCTACCGCAAGGCGTTACGGCTGAGTAAGTCGGCGTTGG
GAGACACCACAGCTGGACATGTGGTGAATCTTATGTCCAACGACGTGGGA
CGTCTCGATCTGGCTACCATATTCGTACACTACTTGTGGGTGGGACCGCT
GGAGACCCTCTTTATCACATACCTAATGTACCGTGAGATTGGAATCGCTG
CTGTGTTTGGTGTGGCCTTCATGTTGCTGTTCATCCCCCTGCAGGCGTAT
CTGGGAAAAAGAACATCGGTGTTGCGACTCAGAACCGCCTTACGCACGGA
TGAAAGGGTACGGATGATGAACGAAATCATCTCGGGCATTCAGGTGATTA
AAATGTACGCATGGGGATTGCCATTCGAACATATGGTGCCTTTGCCCGTA
AGAAGGAGATAAATGCCATCCGCCATGTGTCCTACATCCGTGAATTCTGC
TCTCCTCATCATCTTTCTGACGCGTGTCTCAATTTTCTGAGTCTGGTGGA
TATGTTCTGCTCGGGACGTCTAACCCGGAAGTGCGTCCTGATCACAGCTA
CTACATATCTGGTACCAATTGACGGTTCCTTC

FMO12587.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7627-RB 4778 CG7627-RB 451..1537 5..1076 5025 98.3 Plus
CG7627-RA 4525 CG7627-RA 206..1292 5..1076 5025 98.3 Plus
CG4562-RE 4825 CG4562-RE 665..1101 505..940 390 73.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8360209..8360519 479..169 1555 100 Minus
2L 23513712 2L 8359234..8359572 1019..686 1430 98.2 Minus
2L 23513712 2L 8359636..8359845 687..478 1050 100 Minus
2L 23513712 2L 8360947..8361033 169..83 435 100 Minus
2L 23513712 2L 8361099..8361179 85..5 405 100 Minus
2L 23513712 2L 18998919..18999168 686..934 285 75.2 Plus
3R 32079331 3R 19870824..19871003 865..686 270 76.7 Minus
2R 25286936 2R 9391482..9391592 484..594 195 78.4 Plus
2L 23513712 2L 19004829..19004886 808..865 185 87.9 Plus
Blast to na_te.dros performed on 2014-11-28 18:27:04 has no hits.

FMO12587.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:18 Download gff for FMO12587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7627-RA 15..1063 1..1039 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:20 Download gff for FMO12587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7627-RA 201..1249 1..1039 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:40 Download gff for FMO12587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7627-RA 201..1249 1..1039 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:40 Download gff for FMO12587.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8359636..8359844 479..687 100 <- Minus
2L 8360210..8360518 170..478 100 <- Minus
2L 8360947..8361032 84..169 100 <- Minus
2L 8361101..8361184 1..83 97   Minus
2L 8359236..8359570 688..1017 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:20 Download gff for FMO12587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8361101..8361184 1..83 97   Minus
arm_2L 8359236..8359570 688..1017 98 <- Minus
arm_2L 8359636..8359844 479..687 100 <- Minus
arm_2L 8360210..8360518 170..478 100 <- Minus
arm_2L 8360947..8361032 84..169 100 <- Minus