FMO12587.5prime Sequence
1082 bp (969 high quality bases) assembled on 2012-10-30
> FMO12587.5prime
GTCGACATGCAGTCGCTGAAAACGGCAGATTTGCCGGAAAATCCCCGGGA
ACATTGCAATTTTATTTCGGCAGCATGTTTTTGGTACACCATGCCGACTT
TTATCAAGGGTCGGAAACGCACATTGGATACCAAGGATCTTTACAGAGCC
TTAAAAGAGCACAAATCTGAGACTCTGGGGAACAAATTGTGCGCTTCCTG
GGAATTGGAACTTGAGAAGACCAAAGGAAAGCCCAATTTGTTGAGAGCCC
TTCTGCGAGTTTTTGGCTGGTACTTCGCACTGCTTGGCCTGGTGCTTTTC
CTGCTGGAATTGGGTCTTCGAACGCTTCAGCCAATCTTCCTGCTGAAACT
CATCGCCTACTACACACATGGCTCGGAATCGATTGAATCGGCCTATTACT
ATGCAGCTGGAGTGATCCTGTGCAGTGCCCTCAATGTCATTATAATGCAT
CCCTATATGCTAGGCACAATGCATGTGGGACTCAAGATGCGCGTTGGTAT
GTGCAGCATGATCTACCGCAAGGCGTTACGGCTGAGTAAGTCGGCGTTGG
GAGACACCACAGCTGGACATGTGGTGAATCTTATGTCCAACGACGTGGGA
CGTCTCGATCTGGCTACCATATTCGTACACTACTTGTGGGTGGGACCGCT
GGAGACCCTCTTTATCACATACCTAATGTACCGTGAGATTGGAATCGCTG
CTGTGTTTGGTGTGGCCTTCATGTTGCTGTTCATCCCCCTGCAGGCGTAT
CTGGGAAAAAGAACATCGGTGTTGCGACTCAGAACCGCCTTACGCACGGA
TGAAAGGGTACGGATGATGAACGAAATCATCTCGGGCATTCAGGTGATTA
AAATGTACGCATGGGGATTGCCATTCGAACATATGGTGCCTTTGCCCGTA
AGAAGGAGATAAATGCCATCCGCCATGTGTCCTACATCCGTGAATTCTGC
TCTCCTCATCATCTTTCTGACGCGTGTCTCAATTTTCTGAGTCTGGTGGA
TATGTTCTGCTCGGGACGTCTAACCCGGAAGTGCGTCCTGATCACAGCTA
CTACATATCTGGTACCAATTGACGGTTCCTTC
FMO12587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7627-RB | 4778 | CG7627-RB | 451..1537 | 5..1076 | 5025 | 98.3 | Plus |
CG7627-RA | 4525 | CG7627-RA | 206..1292 | 5..1076 | 5025 | 98.3 | Plus |
CG4562-RE | 4825 | CG4562-RE | 665..1101 | 505..940 | 390 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8360209..8360519 | 479..169 | 1555 | 100 | Minus |
2L | 23513712 | 2L | 8359234..8359572 | 1019..686 | 1430 | 98.2 | Minus |
2L | 23513712 | 2L | 8359636..8359845 | 687..478 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 8360947..8361033 | 169..83 | 435 | 100 | Minus |
2L | 23513712 | 2L | 8361099..8361179 | 85..5 | 405 | 100 | Minus |
2L | 23513712 | 2L | 18998919..18999168 | 686..934 | 285 | 75.2 | Plus |
3R | 32079331 | 3R | 19870824..19871003 | 865..686 | 270 | 76.7 | Minus |
2R | 25286936 | 2R | 9391482..9391592 | 484..594 | 195 | 78.4 | Plus |
2L | 23513712 | 2L | 19004829..19004886 | 808..865 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:27:04 has no hits.
FMO12587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:18 Download gff for
FMO12587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7627-RA | 15..1063 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:20 Download gff for
FMO12587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7627-RA | 201..1249 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:40 Download gff for
FMO12587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7627-RA | 201..1249 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:40 Download gff for
FMO12587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8359636..8359844 | 479..687 | 100 | <- | Minus |
2L | 8360210..8360518 | 170..478 | 100 | <- | Minus |
2L | 8360947..8361032 | 84..169 | 100 | <- | Minus |
2L | 8361101..8361184 | 1..83 | 97 | | Minus |
2L | 8359236..8359570 | 688..1017 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:20 Download gff for
FMO12587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8361101..8361184 | 1..83 | 97 | | Minus |
arm_2L | 8359236..8359570 | 688..1017 | 98 | <- | Minus |
arm_2L | 8359636..8359844 | 479..687 | 100 | <- | Minus |
arm_2L | 8360210..8360518 | 170..478 | 100 | <- | Minus |
arm_2L | 8360947..8361032 | 84..169 | 100 | <- | Minus |