FMO12588.5prime Sequence
1120 bp (1025 high quality bases) assembled on 2012-10-30
> FMO12588.5prime
AGTCGACATGAGCGGATCCAATGCAAAGTCCTCGGGGACTGGCTTCGGCA
GCCACATTCCCAGCATCGAGGAAAAGAACAAGCAGATCCAGCAGGAAACC
ATGATGGAGAAGCTGCGGGCCAAGTACCGGAACAAGCCAAAGAGCTACGA
GGAGATCAAGAAGTCGGTGCGTATGTACTTTATCGAGAAGCACTACCCTC
TGGACCCCCTGTGCAAGGCCACGCTGCAGTCGGCGCTGGACAAGTTGCAG
CACTACATCAAGGTCACGTCACGCCACGGCCTTGTGGAGCGTTTGGAGAG
CCTCTCGCGCCAGTTGGGCCTCAAGTTCATGGAGGACCAGCAGCTTCTCT
TCATATCAACGGACATGTTCTACGTAGAGATCCTGCTGGACGCCGCCGGC
AGTCTGTCGGACGTCAAGGTGCACCACGAGTGCAAGATCGAGCAACAGTC
CAGCGAGCTAGTGGCCTGCCTCAAGTCTGGCGACTTTGCAGACTTTACGG
TTCAACTCGAGGGTCTGTCCTCCATTTACCAGCTGAATGCCGAGCCCAAG
GTGAAAAAGAAGGCGTTTGTAGCGCTTCAGGCCATGGAGACGGATATCCA
GAGCCTATACCAACTGCACCTGCAAGGTCACTCCGGAGACAGCTACTCAC
TTATGACAAGTTCATCGGTGGGTCTTGTGCTGCCCCGTCGCGGTGGCCAT
CCTATGAGGCTTACTTATTTCTGCCCGCCGCTCCACCTTCCCGAAGGGGA
TCCCAAACTGGCCAGCGGCGATTTCACCATCGACCAGGTAATGCGAAGCA
GCTACGGACTGAGTGCCACTATCAATCTCGAAGGCTCATCAGCCAACAAA
CTGCAGACTTTGCCAACGGTGACTTTGGTCCGCGATGCCCAAACGGGGTT
GGAGGTTCCCACCTATGCCCAACTTAACCAGAACACTCGCTGCTGATGCC
GGCCACGTTTGTGCTTCGGCTGAACAACCCATGCCTGTTTGCCTGGAATC
ACTAAAGCCTCTCGGTCTGCCCGGTCTAAACTCAGTTGCCACTCCTCCTT
GGTCCGCCCCACCACAGTGCCTTAATCTCTTAGTTACAACTGCATTGGAG
ACAGTCATTAAGAACCCACA
FMO12588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-RC | 4957 | CG7162-RC | 152..1263 | 8..1120 | 5255 | 98.6 | Plus |
| MED1-RB | 4185 | CG7162-RB | 152..1263 | 8..1120 | 5255 | 98.6 | Plus |
| MED1-RA | 4962 | CG7162-RA | 152..1263 | 8..1120 | 5255 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21633119..21634197 | 1120..41 | 4965 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:11 has no hits.
FMO12588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:19 Download gff for
FMO12588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RB | 144..1244 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:25 Download gff for
FMO12588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 146..1246 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:43 Download gff for
FMO12588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 146..1246 | 1..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:43 Download gff for
FMO12588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21633136..21634196 | 42..1104 | 98 | <- | Minus |
| 3L | 21634262..21634301 | 1..41 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:25 Download gff for
FMO12588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21626236..21627296 | 42..1104 | 98 | <- | Minus |
| arm_3L | 21627362..21627401 | 1..41 | 92 | | Minus |
