FMO12589.5prime Sequence
1074 bp (954 high quality bases) assembled on 2012-10-30
> FMO12589.5prime
AGTCGACATGCCCAGGATGGGGAGACGTCACAAACACTGCCATCATCGGT
TGTGCGCTTCATCTTCATCTCCGCTGCAGCGGCTGGTGGAGCTGCAGCTC
CTTCTGCCGGCGCTCTTGGTCGTCCTGCTGGCCACCACTCTGGGACTTGC
CTGCCGTGTCTCCGAGTTCTCCTGCAAGGGCAGCGGGAACAGCGGCACCA
TCTGCGTGCCCCTGGACAAATACTGCGACGGACGCAGCGATTGCGCCGAT
GGCAGCGATGAACCCAAACATTGCTCCGTCTGCAATCGTACATATTATGG
GGATATCGGACGCACCTATGCCATAAAAGTGCCAACGCCACAGTGGAATA
AATTGCCCTTCCTCTGTCACTTGACATTCACAGCATCCGGTCATGATCAA
GGCGACATTGTGCAGATTATCTTCGATGGCTTCACGGTGGGAAGGTTCGA
CGAGGGCATGGTCGACACGGATGTGGATGGTTACGAAACGAACCTCAGTC
CCACGGGCGAATTGCCAGGATGTCCCGAGGGCTTCATGCAGCTCAGCGAA
TTGGGACGCCCATTCACCGGCGGCTCCTGGTGCGGCAAGGCCACCGGACC
GCAATTGTACTTTAGCGAAACATCCACGGTGACAGCTTCGGTGAAGGTAT
TTCATCCGCCACGCAATATCCGAGACGAGAAGCCCTTTGAGTTCAGCATA
AGATATAAATTTATAAGCCAGTCGGATGCAGTTGTGAGATACGGCCTGCC
CGATAAGCCGCTCGAACTGGGCCGTGTGACACCCGGCACCTATTGTACCA
GGCAATTCGACGAGTGCTATCGGAACAAGTGTCGCCTGCAAAGTCCAAAT
TATCCTGCATGTATCCGAGGAACGTTACCTGCTACTGGACGATCCGGCAG
AATGAAGTCCCGACCAGCAAGCACGCCATGATTGCCGTTAGCCAGAAAAT
CAGCACAGTCTGGTTAAACGCTCATAGCCAGCTTTAATAAACATCCGTCA
TCGAGCTGTCGACTGTACAGTGACGGACATTGATTTTTCTCGACGCAGTC
ACCACGATTCTGTTTGCCAATACT
FMO12589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32206-RB | 7272 | CG32206-RB | 540..1535 | 8..996 | 4770 | 99 | Plus |
| CG32206-RE | 7272 | CG32206-RE | 540..1535 | 8..996 | 4770 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19385855..19386125 | 278..8 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 19372182..19372404 | 957..737 | 1000 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19385398..19385535 | 415..278 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 19381372..19381500 | 541..413 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 19374734..19374844 | 648..538 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 19373492..19373585 | 738..645 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:18 has no hits.
FMO12589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:19 Download gff for
FMO12589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32206-RB | 513..1529 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:29 Download gff for
FMO12589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32206-RE | 533..1549 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:46 Download gff for
FMO12589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32206-RE | 533..1549 | 1..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:46 Download gff for
FMO12589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19385855..19386129 | 1..278 | 98 | | Minus |
| 3L | 19385398..19385534 | 279..415 | 100 | <- | Minus |
| 3L | 19371223..19371244 | 971..991 | 95 | <- | Minus |
| 3L | 19372166..19372402 | 739..970 | 96 | <- | Minus |
| 3L | 19373492..19373583 | 647..738 | 100 | <- | Minus |
| 3L | 19374736..19374840 | 542..646 | 100 | <- | Minus |
| 3L | 19381372..19381497 | 416..541 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:29 Download gff for
FMO12589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19378498..19378634 | 279..415 | 100 | <- | Minus |
| arm_3L | 19365266..19365502 | 739..970 | 96 | <- | Minus |
| arm_3L | 19364323..19364344 | 971..991 | 95 | <- | Minus |
| arm_3L | 19366592..19366683 | 647..738 | 100 | <- | Minus |
| arm_3L | 19367836..19367940 | 542..646 | 100 | <- | Minus |
| arm_3L | 19374472..19374597 | 416..541 | 100 | <- | Minus |
| arm_3L | 19378955..19379229 | 1..278 | 98 | | Minus |
