FMO12593.5prime Sequence
1098 bp (1014 high quality bases) assembled on 2012-10-30
> FMO12593.5prime
TCGACATGACAGCTGATTCCAGTGCACGTAATGTTTTTCGAAAGAACGGC
GTTGCCGGCTTGGGCAACAACGGTCATGGCCGGAATCTTATTACGACCGC
CAATCCATCCGGAGGAAGTAGCGCCTCGCTGCTACAAAAGCAGTTGTCCT
TCAAAACGCCCGTTGGCTCCAAGCAGATGGGCAAATCCGATGAGATCGAA
ATGATCGACAGTGCTAACATCGAAAACTTCAATACTCGATATAATAAGAA
CAGCATTATAGGATGGATATGCTGTGCCCCGTGCATTTGGCTGCGCACCT
CGGCGGCAGTGCACAAAATGGCCATCACATCAGCCACCCTGTTGGTGACC
ACATTGCTGGTAGCATCGCCCATATTATTTTTGATAAGCACGGCACCCTC
ACCTCTGCCAAGAGATTGCTACATGGACGGGGATCGGTGCTCGCCGGCCG
TTTCAGCACCGCCGGAATGCTCGGATCCCATTTGCGAGGCGGTGGCCTCC
AGCATCCAGGCCAGACTCAATTGGAACAAGGATCCGTGCACGGAGTTCAA
GAAGTTCAGCTGTTGGCGCAACACGCCCAATAAAAATATAACGAACCTCA
TTGAAATGGGAAACTCACAGAAAAGCGTCGATTCACAAATGCTGTATCTA
TTCCAGAACAAGATTATGAACGGCAGCTTTGGTATATTGCACAATTTGTT
TGAAAGCTGCTTGCAGCAGACAACTAACTCAACTGTCATGCACAGGATAT
TTGATTCCCTATGCGGTTATCTGCCTGTTGGTTCGGTGGGACCATCGAGT
ATAGCACCCTTAATAGCCAAGATCTATGATCTCGGCCCCAGTCCGTTGGT
AGACCTATATCACGACCTTAGCTACGGAAGCGACCGCACATTCTACTTAT
TATTAGTGACCAGCACTTCGTCACTATCTCGAGCGAAAAATACGTTGGAT
GAGTCCAAAGCCCCGCCTAGTCGTATCGACAAGGGTACCGAGTGTTAGCG
ATTTATCGAGATTTCTACTACTTCGTGTCTATGGCTCAGAGTTTCGAAAA
GATACTTATTTTTGACTATACGACTACCAGCTGCAGGTGAACCCTCTC
FMO12593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13650-RB | 2680 | CG13650-RB | 278..1356 | 6..1065 | 4820 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25111464..25111862 | 645..247 | 1995 | 100 | Minus |
| 3R | 32079331 | 3R | 25111121..25111401 | 923..646 | 1260 | 98.2 | Minus |
| 3R | 32079331 | 3R | 25111928..25112170 | 248..6 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:34 has no hits.
FMO12593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:21 Download gff for
FMO12593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13650-RB | 275..1304 | 1..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:40 Download gff for
FMO12593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13650-RB | 275..1304 | 1..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:56 Download gff for
FMO12593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13650-RB | 275..1304 | 1..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:56 Download gff for
FMO12593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25111014..25111057 | 934..976 | 97 | <- | Minus |
| 3R | 25111109..25111401 | 646..933 | 97 | <- | Minus |
| 3R | 25111464..25111860 | 249..645 | 100 | <- | Minus |
| 3R | 25111928..25112172 | 1..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:40 Download gff for
FMO12593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20936736..20936779 | 934..976 | 97 | <- | Minus |
| arm_3R | 20936831..20937123 | 646..933 | 97 | <- | Minus |
| arm_3R | 20937186..20937582 | 249..645 | 100 | <- | Minus |
| arm_3R | 20937650..20937894 | 1..248 | 98 | | Minus |
