FMO12594.5prime Sequence
1096 bp (996 high quality bases) assembled on 2012-10-30
> FMO12594.5prime
GTCGACATGATTGTGCCAACCTTCCATGCGCTCGGCCAAGTCTTGAGGCA
GATGTTTGCGGTCCAACTCCAACAGCAGCAGCAGCGCACTCATAATCAGC
TCCATTACCTCGATTTGTCGCCCGCGCGAACCATCAACCAACTGTTAGTG
TGTCCATGCGCATCCAATCCTGTACCTCCTGCTGCCCGTATTAGTCTTGT
ACATATAACCCTCGAACCGATCAATGCCAGCCGGACGACCAGTTGCCTGA
TCGAGGAGGTAGCCGAGCCGGATTCACAGCCGGAGATTAAGCCGGTGGCA
GAAGCGCAGTCTGCCAAAGTATCCGAGGCTTGTGTCGAAAGTATTCTCCC
CGAGACAGTTGAAAAGTTAGAAACAGCAGACCAGGTCCAGCAGGTTATAC
CACAGTTGGGGAAGCTTTACGTGGGCAGTAGCCAGCATTTTGTATGCGCA
GCAGTCATCGCCCATCATCCAGGAGCCAGCTACTCCTACTATTTACGGAA
ACAGCGCCGCAGCCGGAGCGCCGCAGTTCCCGCAGCCCGCCCAAAGGCAA
GAGAAGCAGCCTCCGCAGCAGCAGCCCATCTACGCTAACCAGTATGAGCT
GAATGTGGCCAAGGCGGCAGCTGCAGCATCTGTTTACTCACCCAGCTCCT
CCACCACCAGCAACTCCAATCAACAGCAGCAGCAGCAGCGCCGGAATGTG
GCCCGTGGACTGCAGTATCGTGAATCTGGAGGACTCGAGACTGGACGTGC
TGGCAAGCAGCCACCCAATGCGGGCATGTTGTCAATGGACAACTTCCGTT
TGCTAAGCGTTCTTGGTCGCGGCCACTTTGGCAAGGTGATTCTGTCCCAA
TTGCGAAGCAACAACCAGTACTACGCTATTAAGGCACTGAAGAAGGAGAC
ATCATTGCCCGCGACGAAGTGAGTCCTGCTTAGCGAAAAGCGCATCTCGA
GGTGGCCAACGCATGCGCCATCGTCTAGTTAACTTGTATTCGTGCTCAGA
CTGACACACGTATGCTTTGTGATGAATACGCTGCTGGCGGAGATTTGATG
ATGCACATCACACGAACGGGTTCTTAGAGCGGAAGCCCGATTTAGC
FMO12594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-RE | 3617 | CG2049-RE | 91..1177 | 7..1080 | 4985 | 98.1 | Plus |
| Pkn-RR | 4490 | CG2049-RR | 2667..3576 | 184..1080 | 4100 | 97.7 | Plus |
| Pkn-RN | 5082 | CG2049-RN | 3259..4168 | 184..1080 | 4100 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9255100..9255711 | 996..392 | 2595 | 97.6 | Minus |
| 2R | 25286936 | 2R | 9255827..9256038 | 395..184 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 9256110..9256287 | 184..7 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 9254944..9255020 | 1080..1006 | 240 | 93.5 | Minus |
Blast to na_te.dros performed 2014-11-28 18:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6533..6600 | 210..277 | 115 | 63.2 | Plus |
FMO12594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:15 Download gff for
FMO12594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RE | 97..1189 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:02 Download gff for
FMO12594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RE | 88..1180 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:24 Download gff for
FMO12594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RE | 88..1180 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:24 Download gff for
FMO12594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9254941..9255022 | 1005..1083 | 91 | <- | Minus |
| 2R | 9255089..9255709 | 394..1004 | 97 | <- | Minus |
| 2R | 9255829..9256038 | 184..393 | 100 | <- | Minus |
| 2R | 9256111..9256290 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:02 Download gff for
FMO12594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5142446..5142527 | 1005..1083 | 91 | <- | Minus |
| arm_2R | 5142594..5143214 | 394..1004 | 97 | <- | Minus |
| arm_2R | 5143334..5143543 | 184..393 | 100 | <- | Minus |
| arm_2R | 5143616..5143795 | 1..183 | 97 | | Minus |
