FMO12602.5prime Sequence
1043 bp (931 high quality bases) assembled on 2013-01-17
> FMO12602.5prime
CAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTACCATCGGT
AACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCAACGACGAT
GGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTGCTCCCAAA
TTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGGACAAGAAC
AAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCGAGTTCCTC
GGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCAGGCCAAAT
CGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCGCAAGTCTG
AGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCCTACGAGAC
CAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAGCTCTTCGC
TGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCATCCGCCCAG
GAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACAGATGGCGG
CAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAAGACTGTCT
CCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGCGCTCCGGC
ATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCCAAGGAAAT
GAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTACAAGGCCG
CCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCCCGCCCGGG
AATGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCGTTTGCCGGAGGAT
TCTCACACCATCACGCCGCCATGTTGGCAGTTGCTGCCAATGGAGGATAT
CCAGGCGGAGCCTCCCTGGCGGTGTACCAGCCGGACAGCCCAATCCGTAC
TAAAGTTATCCACGGCCATCAGAACCCAGCTGGCGGGCAAGGCCTATATT
GGCAAGCCTGCCAGGATCGGTATTGCAGGACAGTTTCCCTATC
FMO12602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| noc-RB | 2673 | CG4491-RB | 388..1398 | 9..1026 | 4670 | 97.7 | Plus |
| noc-RA | 2859 | CG4491-RA | 388..1398 | 9..1026 | 4670 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14491637..14492496 | 98..960 | 4110 | 99 | Plus |
| 2L | 23513712 | 2L | 14491246..14491335 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1440..1507 | 134..201 | 114 | 68.6 | Plus |
FMO12602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:46 Download gff for
FMO12602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| noc-RA | 377..1333 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:56 Download gff for
FMO12602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| noc-RA | 380..1336 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:37 Download gff for
FMO12602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| noc-RA | 380..1336 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:37 Download gff for
FMO12602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14491238..14491335 | 1..98 | 95 | -> | Plus |
| 2L | 14491638..14492514 | 99..976 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:56 Download gff for
FMO12602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14491238..14491335 | 1..98 | 95 | -> | Plus |
| arm_2L | 14491638..14492514 | 99..976 | 98 | <- | Plus |
