Clone FMO12603 Report

Search the DGRC for FMO12603

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:3
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1832-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12603.5prime Sequence

1034 bp (906 high quality bases) assembled on 2013-01-17

> FMO12603.5prime
CAGTCGACATGGAAGACCTTACCAAAAACATTATCTTCACAAATGCCATT
AATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGCACCATTCT
TAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCCTACCTTCT
ATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCACAGCTGGCC
ACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTGGGCGGATA
CAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGCAGCTCTTG
GCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCAATCAAAAT
AAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTAAGTGTGACGT
ATGTTCAGATATGTTCCCTCATTTGGCACTTCTTAATGCTCATAAGCGGA
TGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACGCCCAAGCG
GGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTGCAGGCACA
GAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGTGTCTTCTG
ACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGCAACATGAG
TCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTGCAGCAGTC
CAAACGCAAAGGTCCAAAGCAGGTGCGCTGCGAGTCCTGCATGCAGGCTG
AACAAACAGCGCAACAACAACAGCAGCTCTTCGTCGCCCAAGACGGTCAA
ATGGCGCATCCCGTGCAAATCATATCAACGACTCCTCAGCCCAAGCACAA
CTTCAGCAAATTGTGGCTGCACAGACTGGCGGTACAACGCCAAAGCGAGA
GCCGAGCAGTGGTCTGGGCATCATCCTGTGAAAAAACGACTTCCCAGCGA
TGACCAATGCCAAAATGCATGGCTCCGGCTGGGTGCTATGGGCAGCACTT
CCCCATGCTCACAAACGGGTGGGGCGGATCGGTA

FMO12603.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RB 2897 CG1832-RB 364..1399 8..1034 4755 98 Plus
Clamp-RA 2636 CG1832-RA 364..1399 8..1034 4755 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22167635..22168066 797..366 2160 100 Minus
2L 23513712 2L 22168120..22168320 365..165 1005 100 Minus
2L 23513712 2L 22168379..22168536 165..8 790 100 Minus
2L 23513712 2L 22167431..22167577 939..795 605 97.3 Minus
Blast to na_te.dros performed on 2014-11-28 18:25:30 has no hits.

FMO12603.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:46 Download gff for FMO12603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 412..1446 8..1033 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:02 Download gff for FMO12603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 364..1398 8..1033 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:43 Download gff for FMO12603.5prime
Subject Subject Range Query Range Percent Splice Strand
Clamp-RA 364..1398 8..1033 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:43 Download gff for FMO12603.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22167330..22167576 796..1033 91 <- Minus
2L 22167637..22168066 366..795 100 <- Minus
2L 22168120..22168320 165..365 100 <- Minus
2L 22168380..22168536 8..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:02 Download gff for FMO12603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22167330..22167576 796..1033 91 <- Minus
arm_2L 22167637..22168066 366..795 100 <- Minus
arm_2L 22168120..22168320 165..365 100 <- Minus
arm_2L 22168380..22168536 8..164 100   Minus