FMO12603.5prime Sequence
1034 bp (906 high quality bases) assembled on 2013-01-17
> FMO12603.5prime
CAGTCGACATGGAAGACCTTACCAAAAACATTATCTTCACAAATGCCATT
AATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGCACCATTCT
TAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCCTACCTTCT
ATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCACAGCTGGCC
ACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTGGGCGGATA
CAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGCAGCTCTTG
GCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCAATCAAAAT
AAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTAAGTGTGACGT
ATGTTCAGATATGTTCCCTCATTTGGCACTTCTTAATGCTCATAAGCGGA
TGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACGCCCAAGCG
GGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTGCAGGCACA
GAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGTGTCTTCTG
ACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGCAACATGAG
TCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTGCAGCAGTC
CAAACGCAAAGGTCCAAAGCAGGTGCGCTGCGAGTCCTGCATGCAGGCTG
AACAAACAGCGCAACAACAACAGCAGCTCTTCGTCGCCCAAGACGGTCAA
ATGGCGCATCCCGTGCAAATCATATCAACGACTCCTCAGCCCAAGCACAA
CTTCAGCAAATTGTGGCTGCACAGACTGGCGGTACAACGCCAAAGCGAGA
GCCGAGCAGTGGTCTGGGCATCATCCTGTGAAAAAACGACTTCCCAGCGA
TGACCAATGCCAAAATGCATGGCTCCGGCTGGGTGCTATGGGCAGCACTT
CCCCATGCTCACAAACGGGTGGGGCGGATCGGTA
FMO12603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RB | 2897 | CG1832-RB | 364..1399 | 8..1034 | 4755 | 98 | Plus |
Clamp-RA | 2636 | CG1832-RA | 364..1399 | 8..1034 | 4755 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22167635..22168066 | 797..366 | 2160 | 100 | Minus |
2L | 23513712 | 2L | 22168120..22168320 | 365..165 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 22168379..22168536 | 165..8 | 790 | 100 | Minus |
2L | 23513712 | 2L | 22167431..22167577 | 939..795 | 605 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:30 has no hits.
FMO12603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:46 Download gff for
FMO12603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 412..1446 | 8..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:02 Download gff for
FMO12603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 364..1398 | 8..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:43 Download gff for
FMO12603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clamp-RA | 364..1398 | 8..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:43 Download gff for
FMO12603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22167330..22167576 | 796..1033 | 91 | <- | Minus |
2L | 22167637..22168066 | 366..795 | 100 | <- | Minus |
2L | 22168120..22168320 | 165..365 | 100 | <- | Minus |
2L | 22168380..22168536 | 8..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:02 Download gff for
FMO12603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22167330..22167576 | 796..1033 | 91 | <- | Minus |
arm_2L | 22167637..22168066 | 366..795 | 100 | <- | Minus |
arm_2L | 22168120..22168320 | 165..365 | 100 | <- | Minus |
arm_2L | 22168380..22168536 | 8..164 | 100 | | Minus |