Clone FMO12604 Report

Search the DGRC for FMO12604

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscripteEF1delta-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12604.5prime Sequence

793 bp (793 high quality bases) assembled on 2013-01-17

> FMO12604.5prime
CAGTCGACATGAAAGTAGAGGCATTGGACAAATTCTGGGCTGACAAGAGC
CGCTACGATCTTGCCGAGAAGCGATTCTACGAGGGTCCCCAGAAGGTAAC
TGATCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAAGGCTAGGG
AACACATACAGAACTCGCTGGAAAAGATCGATGGCGTTACTCTGGACGAT
GGCTTAAATTCCGAGCTGGCCAAGCGTCTGGCCCAATTGGAGGGTGAACA
CAAGGAGTTGAAGACCCAGGTTTCCTTGTTGAACGAACTTTTGACTGCCA
CAGTGAAGCGCTTGGAAACTCAGCTGAAATTGACGAATGGAGTGTCGAAA
GAGCCCGAGGTCGAAGCGAAAAAACCAGAAGCGAACGACGACGATGACGA
TGTGGATCTATTTGGATCGGACAGCGAGGAGGAGGATGGAGAGGCCGCCC
GCATAAGGGAGGAAAGGCTGGCAGCCTATGCTGCCAAGAAGGCCAAGAAA
GTTCAAATTATTGCCAAGTCGAACATCATTCTGGATGTTAAGCCGTGGGA
CGATGAGACCGATCTGAAGGTTATGGAGACGGAAATCCGCAAAATCACCC
AGGACGGTCTACTGTGGGGAGCTTCCAGATTCGTGCCAGTTGCCTTTGGC
ATTCAGAAACTGAGCATTTCATGCGTGGTTGAGGATGATAAGGTTTCCAT
CGATTGTCTGACTGATTAGATCGAGAAACTGGATGACTTTGTCCAAAGTG
TTGACATCGCTGCGTTCAACAAATCGCAAGCTTTCTAGACCAT

FMO12604.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..831 9..773 3750 99.3 Plus
eEF1delta-RA 847 CG4912-RA 151..750 174..773 2925 99.2 Plus
eEF1delta-RA 847 CG4912-RA 67..153 9..95 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234353 175..773 2920 99.2 Plus
2L 23513712 2L 10232573..10232663 9..99 455 100 Plus
2L 23513712 2L 10233478..10233561 93..176 420 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:25:38 has no hits.

FMO12604.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:47 Download gff for FMO12604.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 81..852 9..780 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:06 Download gff for FMO12604.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..838 9..780 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:46 Download gff for FMO12604.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..838 9..780 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:46 Download gff for FMO12604.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 9..95 100 -> Plus
2L 10233481..10233561 96..176 100 -> Plus
2L 10233757..10234360 177..780 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:06 Download gff for FMO12604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 9..95 100 -> Plus
arm_2L 10233481..10233561 96..176 100 -> Plus
arm_2L 10233757..10234360 177..780 98   Plus