FMO12606.5prime Sequence
982 bp (869 high quality bases) assembled on 2013-01-17
> FMO12606.5prime
CAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAATCTCCGGC
CTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTAATGAGCTC
ACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTTTGTTCTGA
AAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACCTCAAGCGC
ATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATTTGGATGTG
CCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTTCTCGAAGA
AGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCTATTCCGGT
GCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGACACGACGTT
CTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACACGTGTACC
ATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGTACGCTCCC
GGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTGCACATTAT
CATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTACCAGAAGT
ACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCCAGTTCGTC
CTCATCCTGGCTACATGCTGACCGTGGGCGCCAAGGGCTGCAACATGCCC
AAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTTCCTTTACCT
GTTCGGCAATTTCTATCGCAAGACCTACAGAATGCCAAGTCCGTGGATGG
AGGCAGTCGCACCACCGGCAGTAGTTTGGCTCAATCCGCTCTGCGTGCCG
CCGCGTATGGGTTGCATGCCGCAGAACATGAACGCCGGTAAGCATCTGCT
CCGAATGGCCAGGTCGGAAAGGCGTACATCGATCCTGACACAACAGCGTG
GAGCCATGAGCCTGAAGCCAGCCTTCTACCAT
FMO12606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bond-RC | 1503 | CG6921-RC | 164..1116 | 9..955 | 4525 | 98.8 | Plus |
| bond-RA | 1627 | CG6921-RA | 288..1240 | 9..955 | 4525 | 98.8 | Plus |
| bond-RB | 1605 | CG6921-RB | 266..1218 | 9..955 | 4525 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22555403..22556085 | 257..934 | 3155 | 98.8 | Plus |
| 3R | 32079331 | 3R | 22554822..22555013 | 66..257 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 22559621..22559876 | 627..372 | 365 | 76.2 | Minus |
| 3R | 32079331 | 3R | 7982833..7982946 | 652..539 | 315 | 85.1 | Minus |
| 3R | 32079331 | 3R | 4467636..4467744 | 634..526 | 290 | 84.4 | Minus |
| 3R | 32079331 | 3R | 22554700..22554757 | 9..66 | 290 | 100 | Plus |
| 3R | 32079331 | 3R | 22574801..22574887 | 540..626 | 255 | 86.2 | Plus |
| 3R | 32079331 | 3R | 4444123..4444211 | 627..539 | 220 | 83.1 | Minus |
| 3R | 32079331 | 3R | 9813350..9813433 | 372..455 | 195 | 82.1 | Plus |
| 3R | 32079331 | 3R | 22532980..22533064 | 627..543 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:51 has no hits.
FMO12606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:48 Download gff for
FMO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bond-RB | 255..1220 | 1..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:14 Download gff for
FMO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bond-RB | 258..1223 | 1..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:53 Download gff for
FMO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bond-RB | 258..1223 | 1..959 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:53 Download gff for
FMO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22554692..22554757 | 1..66 | 93 | -> | Plus |
| 3R | 22554823..22555013 | 67..257 | 100 | -> | Plus |
| 3R | 22555404..22556112 | 258..959 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:14 Download gff for
FMO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18380414..18380479 | 1..66 | 93 | -> | Plus |
| arm_3R | 18380545..18380735 | 67..257 | 100 | -> | Plus |
| arm_3R | 18381126..18381834 | 258..959 | 98 | | Plus |
