Clone FMO12607 Report

Search the DGRC for FMO12607

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:7
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12607.5prime Sequence

1006 bp (920 high quality bases) assembled on 2013-01-17

> FMO12607.5prime
CAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGAAGGACGAA
CCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATTTCTAACAG
CGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTTCTGTAGTT
ATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGCTGAAGACG
TGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAAACAGATAC
GTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGAAAACCTCG
AATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGTGTTCCCAC
TGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACATCTGCATGA
GCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGACGTCGTTCG
CGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTGAAGAACGA
CCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAATTCACATCT
CCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAAGTGTTCCC
ACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGCACTTGCTG
ACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAGACTTTTCT
GCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGGCGAAGACC
CGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATTCGAGACTT
CAACTACACTTACTTGAGCACGCTGGAAAGAGCCCCTGAGTGTTCCCAGT
GCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCACGTGCGTTTG
CATACAAGAAAAGCGACAGTACAGGGGCGCCGAATGCTCGAATCTTTCTT
CAGAGTCACATCTTTGGGGGAGCATCAGCAAGGTGCATAGAGAGCCACCT
TTATGT

FMO12607.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 470..1120 340..989 3000 98 Plus
CG5245-RA 1623 CG5245-RA 58..414 9..365 1740 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430082..12430696 340..952 2835 98.9 Plus
3R 32079331 3R 12429670..12430026 9..365 1740 99.2 Plus
Blast to na_te.dros performed 2014-11-28 18:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1342..1379 603..640 109 76.3 Plus

FMO12607.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:49 Download gff for FMO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 24..366 1..341 98 -> Plus
CG5245-RA 447..1101 342..994 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:20 Download gff for FMO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 49..391 1..341 98 -> Plus
CG5245-RA 472..1126 342..994 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:57 Download gff for FMO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 49..391 1..341 98 -> Plus
CG5245-RA 472..1126 342..994 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:57 Download gff for FMO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12429663..12430003 1..341 98 -> Plus
3R 12430084..12430738 342..994 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:20 Download gff for FMO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8255385..8255725 1..341 98 -> Plus
arm_3R 8255806..8256460 342..994 97   Plus