FMO12607.5prime Sequence
1006 bp (920 high quality bases) assembled on 2013-01-17
> FMO12607.5prime
CAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGAAGGACGAA
CCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATTTCTAACAG
CGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTTCTGTAGTT
ATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGCTGAAGACG
TGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAAACAGATAC
GTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGAAAACCTCG
AATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGTGTTCCCAC
TGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACATCTGCATGA
GCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGACGTCGTTCG
CGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTGAAGAACGA
CCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAATTCACATCT
CCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAAGTGTTCCC
ACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGCACTTGCTG
ACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAGACTTTTCT
GCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGGCGAAGACC
CGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATTCGAGACTT
CAACTACACTTACTTGAGCACGCTGGAAAGAGCCCCTGAGTGTTCCCAGT
GCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCACGTGCGTTTG
CATACAAGAAAAGCGACAGTACAGGGGCGCCGAATGCTCGAATCTTTCTT
CAGAGTCACATCTTTGGGGGAGCATCAGCAAGGTGCATAGAGAGCCACCT
TTATGT
FMO12607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 470..1120 | 340..989 | 3000 | 98 | Plus |
CG5245-RA | 1623 | CG5245-RA | 58..414 | 9..365 | 1740 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430082..12430696 | 340..952 | 2835 | 98.9 | Plus |
3R | 32079331 | 3R | 12429670..12430026 | 9..365 | 1740 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1342..1379 | 603..640 | 109 | 76.3 | Plus |
FMO12607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:49 Download gff for
FMO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 24..366 | 1..341 | 98 | -> | Plus |
CG5245-RA | 447..1101 | 342..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:20 Download gff for
FMO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 49..391 | 1..341 | 98 | -> | Plus |
CG5245-RA | 472..1126 | 342..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:57 Download gff for
FMO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 49..391 | 1..341 | 98 | -> | Plus |
CG5245-RA | 472..1126 | 342..994 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:57 Download gff for
FMO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12429663..12430003 | 1..341 | 98 | -> | Plus |
3R | 12430084..12430738 | 342..994 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:20 Download gff for
FMO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8255385..8255725 | 1..341 | 98 | -> | Plus |
arm_3R | 8255806..8256460 | 342..994 | 97 | | Plus |