FMO12609.5prime Sequence
302 bp (302 high quality bases) assembled on 2013-01-17
> FMO12609.5prime
CAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCCCCGCGTGC
GGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGCTACAAATT
CCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCTGGACTCGA
CCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACTGCCATGGT
CGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCCGGCTGCCT
GTCCACGGACACTGGCGCCCACTTAAACAGAGAGGCAAGCTTTCTAGACC
AT
FMO12609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlp60A-RE | 440 | CG42309-RE | 83..358 | 9..284 | 1380 | 100 | Plus |
| Mlp60A-RF | 670 | CG42309-RF | 50..325 | 9..284 | 1380 | 100 | Plus |
| Mlp60A-RC | 2468 | CG42309-RC | 493..767 | 9..283 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24075449..24075609 | 124..284 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 24075223..24075338 | 9..124 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 7115504..7115734 | 261..31 | 420 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:04 has no hits.
FMO12609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:50 Download gff for
FMO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RE | 73..361 | 1..289 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:24 Download gff for
FMO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RE | 74..362 | 1..289 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:59 Download gff for
FMO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RF | 41..329 | 1..289 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:59 Download gff for
FMO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24075214..24075337 | 1..123 | 97 | -> | Plus |
| 2R | 24075449..24075613 | 124..289 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:24 Download gff for
FMO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19962737..19962860 | 1..123 | 97 | -> | Plus |
| arm_2R | 19962972..19963136 | 124..289 | 98 | | Plus |
