FMO12613.5prime Sequence
1007 bp (922 high quality bases) assembled on 2013-01-17
> FMO12613.5prime
CAGTCGACATGATGGAACGTCTGTCCACGCACCTGTCGCTCACCGGCCTA
TCGCTAGCTCATCCCCTGCAAACTCACCTGGGTTCCGGCGGCGGAACGCA
CCACCTTGGTCAACTGGCGGCGGCGGTGCATCAGCAGCAACAGCAGCAGC
AACAATCTGACCAGGGTCTCGGCCACTCGCACCACCTGCACGGCCAGCAG
TTGTCGCTGAACCACCAGCACCACCATCCCCACCAGTCGCCACAGCATCA
GCAGCAGCATCAGCACCACCCGTGCAGTAGCAACAGCAGCAACGGATCCC
CCAACGGCTCCACCGGCCTGGGCCTGCATCCCCACTCGGCGCTCCACCTG
GCACACCATCACTCGCAGCTGCATCAGCACCACCCGGCGGGTCAGCAGCA
GCAGCACAGCCAACCGCCGGTTTCCTCCTCCTCGACCTCGCACCACAGCC
AGTCGCAGGCGCTGAGCCATCAGACGCACAGCAACGGCAGCTCCCAGCTG
GGCGGTGGTTCGGCCAGTGGTGCGGGATCAGTGGCCGGCGGTGCAGCCAA
CAGCCACCACAGTGCTCCAGCCTCCAGCAGCGTGATGGCGGCCGCAGCAG
CCGCCCACCTGCATCACAACTCGCAGGCATCGCCCATCAGCAATCTGCAC
CAAAACATGGGCAGTCTCATGAACAGCGGAAGCAGCGCGAGCGATGTCTT
CTTTAGTCTGATGATCCAGACACAACAAAGCGCCAAAACGAGGAGCACAT
AAAACGTCCAATGAACGCTTTCATGGTCTGGTCGAGACTTCAGCGGCGCA
GATAGCTCAGATAATCCTAAGATGCACAATTCAGAGATATCCCAAAGGCT
GGGTGCCGAGTGAAGTTGCTCACCGAGAAGAGAGCGTCCGTTTCATCGAT
GAGGCCAACGATTGAGGGCCATGCACATGAAGGACATCCCGGACTTATAA
TACGACCGCGACGAAAGCCAAGCTCTGAAACGCGATGCTTATCCCTACCC
ATGCCAA
FMO12613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 863..1874 | 5..1006 | 4565 | 97.6 | Plus |
| Sox21b-RB | 3201 | CG32139-RB | 863..1874 | 5..1006 | 4565 | 97.6 | Plus |
| Sox21b-RA | 2648 | CG32139-RA | 310..1321 | 5..1006 | 4565 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14125390..14126076 | 691..5 | 3420 | 99.9 | Minus |
| 3L | 28110227 | 3L | 14125084..14125251 | 854..690 | 675 | 97.6 | Minus |
Blast to na_te.dros performed 2014-11-28 18:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6911 | 129..317 | 290 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2539 | 122..373 | 263 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6923 | 128..317 | 255 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6923 | 128..293 | 252 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2541 | 129..336 | 237 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6959 | 211..420 | 234 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2642 | 128..419 | 218 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2502 | 129..317 | 214 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6964 | 128..308 | 212 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6952 | 129..289 | 198 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2922 | 99..414 | 193 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 129..271 | 185 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2539 | 129..288 | 183 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6944 | 128..252 | 182 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2961 | 111..293 | 180 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2622 | 121..305 | 155 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7007 | 126..293 | 147 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2831..2989 | 128..288 | 144 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..3031 | 133..379 | 137 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6826 | 345..412 | 135 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1150 | 129..155 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6893..7059 | 129..297 | 120 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1137 | 117..154 | 120 | 82.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7941..7977 | 119..154 | 119 | 83.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9385..9421 | 119..154 | 119 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2427 | 341..414 | 118 | 62.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..705 | 405..338 | 117 | 66.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2370 | 354..410 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1128 | 83..154 | 114 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1585 | 129..190 | 112 | 64.5 | Plus |
FMO12613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:52 Download gff for
FMO12613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 304..1308 | 1..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:42 Download gff for
FMO12613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 304..1308 | 1..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:13 Download gff for
FMO12613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 304..1308 | 1..994 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:13 Download gff for
FMO12613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14118631..14118697 | 853..916 | 91 | <- | Minus |
| 3L | 14125086..14125249 | 692..852 | 97 | <- | Minus |
| 3L | 14125390..14126077 | 1..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:42 Download gff for
FMO12613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14111731..14111797 | 853..916 | 91 | <- | Minus |
| arm_3L | 14118186..14118349 | 692..852 | 97 | <- | Minus |
| arm_3L | 14118490..14119177 | 1..691 | 99 | | Minus |
