Clone FMO12614 Report

Search the DGRC for FMO12614

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:14
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5288-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12614.5prime Sequence

969 bp (892 high quality bases) assembled on 2013-01-17

> FMO12614.5prime
CAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATTTGGGTGCC
GGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCCAAGGTTTA
CGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATTCGGAGCGA
ATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCATTGGCGAG
CATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTAAGCCAGAG
CATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCTTCAACTCA
GAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATCTCAAAACG
CTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTATAACTACTT
CTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCAGTGGAAGC
CCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGGCGGCAGGA
CTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCCACCGCACA
CGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCATTTCGGCCA
TGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATCAGGCAATA
GCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTCCATCCCAA
GCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTTCGTTGTGG
CCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACTACATGACG
AGTGGTGGAATGCCGATTGGCACTAGATGGCTGGCCAAGCGCAAGGGCTT
GATCAACTGGGAGATATTGTGCGCTTCATTGGATCTGCAGGAAGGCGTGC
CAAATGGAATATGGAACTTTTCATAGTTTGGATTACGGACAACTTACCAA
AAGACACTATCCCGCGGCC

FMO12614.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 428..1368 7..946 4365 98 Plus
Galk-RB 2053 CG5288-RB 446..1386 7..946 4365 98 Plus
Galk-RA 2669 CG5288-RA 120..1060 7..946 4365 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8984113..8984669 908..354 2470 98.2 Minus
3L 28110227 3L 8984813..8984988 355..180 880 100 Minus
3L 28110227 3L 8985052..8985227 182..7 880 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:26:44 has no hits.

FMO12614.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:53 Download gff for FMO12614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-RB 437..1359 1..920 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:46 Download gff for FMO12614.5prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 114..1035 1..920 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:17 Download gff for FMO12614.5prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 114..1035 1..920 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:17 Download gff for FMO12614.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8984074..8984667 356..947 96 <- Minus
3L 8984813..8984986 182..355 100 <- Minus
3L 8985053..8985234 1..181 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:46 Download gff for FMO12614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8977174..8977767 356..947 96 <- Minus
arm_3L 8977913..8978086 182..355 100 <- Minus
arm_3L 8978153..8978334 1..181 98   Minus