FMO12615.5prime Sequence
1025 bp (896 high quality bases) assembled on 2013-01-17
> FMO12615.5prime
CAGTCGACATGGACAGGGATTCCTGCCAAAATTTCTCATTAGACTCCACG
AGCAGTTCCCATTTTGCTCCTCCGCCAGTTTGCGCGCCCAGAAGGAAGAA
GCCGGAGAAGCCCGCAGCTGAGGAGGCATCTCCCGAATGCTCCAACGTCA
CATCGTCATCCTCGTCCTCGACAACCACCATATCCATAGGCGCCTTCGAT
TCGCAATGCAACCTCCACAACGCCCGGAATCCCGAGGCCCCGAACATTGG
CTATGAGTTGAACGTGGCCAAGTCCATATTGCAGAAGTATAGCACCCTCA
GTGGGGACAACTTGTTCGATCATCTTAGTGACATCATAAAGAGGGTGATT
GACGAACGTCCTCCGAATGTGATAGACTTCTTCGAGGAATTTAGCCGAAA
TGTTCGCGAACAGAAGTTCCACTTGCCAGAACGCTTTCCGCCCAGTGGCG
TGTTCGATGAGGTGCGATCTTTCCGGGTGGCCAAGAAAATTCTCCAATCC
ATGAAGCTGCCCTATGTCGTTGAGGGTGAGGATCTGATGGGCGAAGACCT
GTCCGTCGAGGATTTGAGAACGAACGAGGATATGCGCATTGTCATCGACG
ATTCCATGCGATACTTCGTCACATTCAACGAGCGAGTCCAGCAGCTGCAG
TTCTATTGGACACAGTGCGGATTTAGCATCAGCAACGACGACATCTTCCA
GCTGGCCAGCGCCATGAACCGGCTGCAGACGCATCCCTCGATCATGCAAT
GCAGATTCTGGGGCTGCATCAACGGACTGAACGCCTCTTACTACATAGTG
GAAGCTTCGCTCACCCGCGAGGAAATCGCCTCGCGCTTGGTCATGATGGA
GAAGAGATGCGGCAGAGCAGATTCCGTTCCCGATGCGCAAGACAAGGGAG
ACCAAGCCACCGCGCGCGCACATTGGGGCCGGAGCTCAACACCGGGCATC
TATAGGGTGGGAGAGATTTCCGCCCTGAGGAAGCTCAGAAAATGAAGCCC
AAGGTGAGCCTCCACGATTATCCCC
FMO12615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3121-RA | 2284 | CG3121-RA | 94..1087 | 9..1004 | 4615 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24018149..24018646 | 505..1004 | 1955 | 95.4 | Plus |
| 2R | 25286936 | 2R | 24017514..24017820 | 9..315 | 1535 | 100 | Plus |
| 2R | 25286936 | 2R | 24017901..24018093 | 314..506 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:51 has no hits.
FMO12615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:53 Download gff for
FMO12615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3121-RA | 87..1094 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:51 Download gff for
FMO12615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3121-RA | 87..1094 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:20 Download gff for
FMO12615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3121-RA | 87..1094 | 1..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:20 Download gff for
FMO12615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24017507..24017818 | 1..313 | 99 | -> | Plus |
| 2R | 24017901..24018093 | 314..506 | 100 | -> | Plus |
| 2R | 24018151..24018653 | 507..1010 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:51 Download gff for
FMO12615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19905030..19905341 | 1..313 | 99 | -> | Plus |
| arm_2R | 19905424..19905616 | 314..506 | 100 | -> | Plus |
| arm_2R | 19905674..19906176 | 507..1010 | 95 | | Plus |
