FMO12619.5prime Sequence
971 bp (874 high quality bases) assembled on 2013-01-17
> FMO12619.5prime
CAGTCGACATGGCGCTGAACAAAAGGAAGAGCCCTTACTCGGACCCAATT
TCGGGCGCCGAAGTGGACTACAAGTTGTCATGTCGCTGCTGCTTGAAGAC
GAACGTGGAGTACGTCAAACTGGACTCGGTGTCGGTGGCGCGCAGTCTGG
ACCCGGCGGACGCCACTGAGAAGATACCGCTCCTTCGTTGCCTGCTGTTC
TGCGTGAGCGCCGATAATGCGCCGGAGCTGCCGCAACACATATGCCTCGA
GTGCAGCAAGAGCCTGCAGGTGGCCTACTACTTCCTTCAGAATGCGCTGC
GTGCCCACGAGATCCTGTGCCGGAAACTATGTCCCAAGGTTTCAAAGAGA
CTGAATGGCACTTTGGCTCAGGAGCAGGAAAAGCCAGCGTGTGCAGAGCC
GGTACAGCCCCTAAAGACCATGCGGCACGAGTGTCAGGTCTGCGGAGTAG
TGCTCTACAATCGCCTGGAGCTCAAGCAGCACATACGCCAGCATGCAGAG
GGTCTTTCATACAACTGCAAGTTGTGCAGCTTCACGTCGTTGAAGCAACG
AACTTTGTTCGAGCACTATGTGACCATGCACAACATGCCCCTTAGCCAGG
CAGAGGAGTACGTAAAATCAAAGCATCTTCCAGCTCCTAAAGAAGAAGAG
GTTAAGGCAGTGTGCACGCTTGAGGATATGGAGTTGCTGATACCCACCGT
ACTTAGGCCGGAAGATTACGTACAGCCGCATCCGCATATTGATAACGACC
AACTGCGAGACATTGATCACCAGCTGGCCGTCAGCATGGATGAACCCGTA
CCGTCAGTGGACAGCCTCACCTCCACCCTGCCGCCGATGGATAACGCCCA
ATGTTAGCATCGGCACCGAGTACCTAGTTCCTTCCCCGACGGTTCGCCTG
CAACAAGATAACGGGAACGGCGGAGTCCTCGAGTATATATGACGAATAGC
AACCGAATAAGTTTCCCGCGC
FMO12619.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30020-RC | 4209 | CG30020-RC | 168..1113 | 9..959 | 4450 | 98.3 | Plus |
| CG30020-RA | 4730 | CG30020-RA | 168..1113 | 9..959 | 4450 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10886977..10887366 | 9..398 | 1950 | 100 | Plus |
| 2R | 25286936 | 2R | 10887595..10887973 | 496..875 | 1850 | 99.7 | Plus |
| 2R | 25286936 | 2R | 10887434..10887535 | 397..498 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:27:04 has no hits.
FMO12619.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:55 Download gff for
FMO12619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30020-RA | 155..1066 | 1..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:58 Download gff for
FMO12619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30020-RA | 160..1071 | 1..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:29 Download gff for
FMO12619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30020-RA | 160..1071 | 1..917 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:29 Download gff for
FMO12619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10886969..10887366 | 1..398 | 98 | -> | Plus |
| 2R | 10887436..10887535 | 399..498 | 100 | -> | Plus |
| 2R | 10887598..10888011 | 499..917 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:58 Download gff for
FMO12619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6774474..6774871 | 1..398 | 98 | -> | Plus |
| arm_2R | 6774941..6775040 | 399..498 | 100 | -> | Plus |
| arm_2R | 6775103..6775516 | 499..917 | 97 | | Plus |
