Clone FMO12621 Report

Search the DGRC for FMO12621

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:21
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(1)G0144-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12621.5prime Sequence

1061 bp (931 high quality bases) assembled on 2013-01-17

> FMO12621.5prime
CAGTCGACATGGAGGAGGAACGCAACGAGAAAAAGGTGCTCTGCGAGAAG
ATCATCAGGGACATCAATGCGGTGTTCCTCAAGGATCAGGATCTCGCCTC
CTTTGAAATTATACCCAAAGAAGCCAACTGCAACAAATCGCCGGTTGTGC
ATGTGGAGCACAATCTGGGCCTGGAATCGTGGTGTGCCCAGCATGTCTAC
GACCACGCCCACCGCACCCTCATCTCCCATCGCCGTCAAACCACGGCGCA
ACAGCTGCGGACGCTGCAGCAGCAGCAGCAGAGCGACTCCCTGGCCAAAT
ACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCTTTTGGCAC
ATCCGCCGTCAGCTGGTGCAAAAGAATCGGCTGAGCATCAACAAGGAGCT
GCAGTTCTCCGCACTCGTGCTCTCAATCAAACCGAAGTCCAATGAAGCAT
TCGCCTACCGCCGTTGGCTGTACTCATTTCAAAGTGCCGATGCTATTGAC
TGGCCCAATGAGATCGGGATATGCGAAAGGGCCGCCGATAGATGCGCCAG
CAACTATCACGCCTGGTCGCACCGCCAGTGGATCCTTCAGAACGGCCCAT
GCCTGCTGCAATCGGAACTGCTACGCACGGAGAAGTTTATGCGGAAGCAC
ATCAGTGACTACAGCTGCTACCACTACCGCCAAGTGCTCCTGAGTCGTGC
ATATGAGCTCAGTTTTGCCCTTCCCAAGGATTCCGGAGCCAGTGGTTCGT
CTACGTTGGCCAGTCTGCAGCATCTAATGACAAGCTATGGCCTGAATGTG
AAGCCAACGCTGAGGATCTGCTGGGTCTCTTGCTACCACATGTGGATCTG
AGTTCCGTGAGCAAGCAAGGCTAATATCATTTCTTTACTGCTGCAACGTT
GCCGCCAACGATATGCGTCTGGTTGCCGAGCACCGCCTTGGATGTACGGA
TTCGCCGGGATTGGTTTCAAGCTGGCCTTCGCCGGTGCGGCATTCAGTTC
TACCTGGGAAACAGGGCGCGCGGCCCGGCAAAATGGGGCTCTGCCCCAAG
GTGCACATCGT

FMO12621.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
temp-RB 1791 CG3073-RB 107..1089 8..996 4610 98.3 Plus
temp-RA 2163 CG3073-RA 479..1461 8..996 4610 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2260961..2261423 936..476 2140 98.5 Minus
X 23542271 X 2261464..2261854 485..95 1955 100 Minus
X 23542271 X 2261951..2262037 94..8 435 100 Minus
Blast to na_te.dros performed 2014-11-28 18:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..198 208..283 113 67.1 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9228 208..283 113 67.1 Plus

FMO12621.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:55 Download gff for FMO12621.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 486..1447 1..966 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:05 Download gff for FMO12621.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 474..1435 1..966 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:33 Download gff for FMO12621.5prime
Subject Subject Range Query Range Percent Splice Strand
temp-RA 474..1435 1..966 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:33 Download gff for FMO12621.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2260935..2261415 484..966 97 <- Minus
X 2261466..2261854 95..483 100 <- Minus
X 2261951..2262041 1..94 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:05 Download gff for FMO12621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2155984..2156074 1..94 95   Minus
arm_X 2154968..2155448 484..966 97 <- Minus
arm_X 2155499..2155887 95..483 100 <- Minus