FMO12621.5prime Sequence
1061 bp (931 high quality bases) assembled on 2013-01-17
> FMO12621.5prime
CAGTCGACATGGAGGAGGAACGCAACGAGAAAAAGGTGCTCTGCGAGAAG
ATCATCAGGGACATCAATGCGGTGTTCCTCAAGGATCAGGATCTCGCCTC
CTTTGAAATTATACCCAAAGAAGCCAACTGCAACAAATCGCCGGTTGTGC
ATGTGGAGCACAATCTGGGCCTGGAATCGTGGTGTGCCCAGCATGTCTAC
GACCACGCCCACCGCACCCTCATCTCCCATCGCCGTCAAACCACGGCGCA
ACAGCTGCGGACGCTGCAGCAGCAGCAGCAGAGCGACTCCCTGGCCAAAT
ACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCTTTTGGCAC
ATCCGCCGTCAGCTGGTGCAAAAGAATCGGCTGAGCATCAACAAGGAGCT
GCAGTTCTCCGCACTCGTGCTCTCAATCAAACCGAAGTCCAATGAAGCAT
TCGCCTACCGCCGTTGGCTGTACTCATTTCAAAGTGCCGATGCTATTGAC
TGGCCCAATGAGATCGGGATATGCGAAAGGGCCGCCGATAGATGCGCCAG
CAACTATCACGCCTGGTCGCACCGCCAGTGGATCCTTCAGAACGGCCCAT
GCCTGCTGCAATCGGAACTGCTACGCACGGAGAAGTTTATGCGGAAGCAC
ATCAGTGACTACAGCTGCTACCACTACCGCCAAGTGCTCCTGAGTCGTGC
ATATGAGCTCAGTTTTGCCCTTCCCAAGGATTCCGGAGCCAGTGGTTCGT
CTACGTTGGCCAGTCTGCAGCATCTAATGACAAGCTATGGCCTGAATGTG
AAGCCAACGCTGAGGATCTGCTGGGTCTCTTGCTACCACATGTGGATCTG
AGTTCCGTGAGCAAGCAAGGCTAATATCATTTCTTTACTGCTGCAACGTT
GCCGCCAACGATATGCGTCTGGTTGCCGAGCACCGCCTTGGATGTACGGA
TTCGCCGGGATTGGTTTCAAGCTGGCCTTCGCCGGTGCGGCATTCAGTTC
TACCTGGGAAACAGGGCGCGCGGCCCGGCAAAATGGGGCTCTGCCCCAAG
GTGCACATCGT
FMO12621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
temp-RB | 1791 | CG3073-RB | 107..1089 | 8..996 | 4610 | 98.3 | Plus |
temp-RA | 2163 | CG3073-RA | 479..1461 | 8..996 | 4610 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2260961..2261423 | 936..476 | 2140 | 98.5 | Minus |
X | 23542271 | X | 2261464..2261854 | 485..95 | 1955 | 100 | Minus |
X | 23542271 | X | 2261951..2262037 | 94..8 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..198 | 208..283 | 113 | 67.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9228 | 208..283 | 113 | 67.1 | Plus |
FMO12621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:55 Download gff for
FMO12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 486..1447 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:05 Download gff for
FMO12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0144-RA | 474..1435 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:33 Download gff for
FMO12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
temp-RA | 474..1435 | 1..966 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:33 Download gff for
FMO12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2260935..2261415 | 484..966 | 97 | <- | Minus |
X | 2261466..2261854 | 95..483 | 100 | <- | Minus |
X | 2261951..2262041 | 1..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:05 Download gff for
FMO12621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2155984..2156074 | 1..94 | 95 | | Minus |
arm_X | 2154968..2155448 | 484..966 | 97 | <- | Minus |
arm_X | 2155499..2155887 | 95..483 | 100 | <- | Minus |