FMO12623.5prime Sequence
952 bp (854 high quality bases) assembled on 2013-01-17
> FMO12623.5prime
CAGTCGACATGATCTATATTGATGACTCAGAGCCGGAAGGTGTTTTGGAA
CCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTCGATGCCCA
TAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATTCGGTACGG
TGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGGCCAAGTTT
GTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGGGAGGTGGA
GATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTACGCGGCAT
ACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCGAAGGAGGT
GAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACCGAACGAGT
CTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTTCATCCACG
GCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTTTGGTGCTC
ACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTGGCTCGTAA
ATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCCGGAATTTG
TGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAACAGATATG
TGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGACTGTCGCCTTTC
ATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCATTGCAAAATA
CGACTTCGAGGATGATGCTTTAATGCATATCCCCCGAGTGTCTGGATTTC
ATAGCCAGCTGCTGGCCAGGACCTGAGCACCTGGATGACAGCCGCCGAGT
GCATGAAGCACAAATGGCTTCAGCAGCGAGGCACCGGCCGCACGGCACGT
CGTTCCAAAGCGCTCCGGCGTCCAAGTCCGCCCTGAAATCTGGGTCTCCG
GG
FMO12623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RD | 6062 | CG42347-RD | 3225..4099 | 9..878 | 4220 | 99.2 | Plus |
sqa-RC | 3214 | CG42347-RC | 377..1251 | 9..878 | 4220 | 99.2 | Plus |
sqa-RB | 2057 | CG42347-RB | 377..1251 | 9..878 | 4220 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9721018..9721257 | 577..338 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 9723540..9723744 | 337..133 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 9719829..9719963 | 818..687 | 525 | 97.8 | Minus |
2R | 25286936 | 2R | 9720662..9720765 | 679..576 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9723829..9723920 | 133..42 | 460 | 100 | Minus |
2R | 25286936 | 2R | 9719698..9719750 | 878..826 | 250 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:10 has no hits.
FMO12623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:51 Download gff for
FMO12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42347-RB | 370..1258 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:27 Download gff for
FMO12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 370..1258 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:03 Download gff for
FMO12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 370..1258 | 1..889 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:03 Download gff for
FMO12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9719691..9719748 | 828..889 | 91 | <- | Minus |
2R | 9719819..9719971 | 680..827 | 96 | <- | Minus |
2R | 9720662..9720765 | 576..679 | 100 | <- | Minus |
2R | 9721020..9721257 | 338..575 | 100 | <- | Minus |
2R | 9723540..9723743 | 134..337 | 100 | <- | Minus |
2R | 9723829..9723919 | 43..133 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:27 Download gff for
FMO12623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5607196..5607253 | 828..889 | 91 | <- | Minus |
arm_2R | 5607324..5607476 | 680..827 | 96 | <- | Minus |
arm_2R | 5608167..5608270 | 576..679 | 100 | <- | Minus |
arm_2R | 5608525..5608762 | 338..575 | 100 | <- | Minus |
arm_2R | 5611045..5611248 | 134..337 | 100 | <- | Minus |
arm_2R | 5611334..5611424 | 43..133 | 100 | <- | Minus |