Clone FMO12623 Report

Search the DGRC for FMO12623

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:23
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42347-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12623.5prime Sequence

952 bp (854 high quality bases) assembled on 2013-01-17

> FMO12623.5prime
CAGTCGACATGATCTATATTGATGACTCAGAGCCGGAAGGTGTTTTGGAA
CCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTCGATGCCCA
TAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATTCGGTACGG
TGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGGCCAAGTTT
GTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGGGAGGTGGA
GATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTACGCGGCAT
ACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCGAAGGAGGT
GAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACCGAACGAGT
CTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTTCATCCACG
GCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTTTGGTGCTC
ACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTGGCTCGTAA
ATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCCGGAATTTG
TGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAACAGATATG
TGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGACTGTCGCCTTTC
ATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCATTGCAAAATA
CGACTTCGAGGATGATGCTTTAATGCATATCCCCCGAGTGTCTGGATTTC
ATAGCCAGCTGCTGGCCAGGACCTGAGCACCTGGATGACAGCCGCCGAGT
GCATGAAGCACAAATGGCTTCAGCAGCGAGGCACCGGCCGCACGGCACGT
CGTTCCAAAGCGCTCCGGCGTCCAAGTCCGCCCTGAAATCTGGGTCTCCG
GG

FMO12623.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RD 6062 CG42347-RD 3225..4099 9..878 4220 99.2 Plus
sqa-RC 3214 CG42347-RC 377..1251 9..878 4220 99.2 Plus
sqa-RB 2057 CG42347-RB 377..1251 9..878 4220 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9721018..9721257 577..338 1200 100 Minus
2R 25286936 2R 9723540..9723744 337..133 1025 100 Minus
2R 25286936 2R 9719829..9719963 818..687 525 97.8 Minus
2R 25286936 2R 9720662..9720765 679..576 520 100 Minus
2R 25286936 2R 9723829..9723920 133..42 460 100 Minus
2R 25286936 2R 9719698..9719750 878..826 250 98.1 Minus
Blast to na_te.dros performed on 2014-11-28 18:26:10 has no hits.

FMO12623.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:51 Download gff for FMO12623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42347-RB 370..1258 1..889 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:27 Download gff for FMO12623.5prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 370..1258 1..889 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:03 Download gff for FMO12623.5prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 370..1258 1..889 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:03 Download gff for FMO12623.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9719691..9719748 828..889 91 <- Minus
2R 9719819..9719971 680..827 96 <- Minus
2R 9720662..9720765 576..679 100 <- Minus
2R 9721020..9721257 338..575 100 <- Minus
2R 9723540..9723743 134..337 100 <- Minus
2R 9723829..9723919 43..133 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:27 Download gff for FMO12623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5607196..5607253 828..889 91 <- Minus
arm_2R 5607324..5607476 680..827 96 <- Minus
arm_2R 5608167..5608270 576..679 100 <- Minus
arm_2R 5608525..5608762 338..575 100 <- Minus
arm_2R 5611045..5611248 134..337 100 <- Minus
arm_2R 5611334..5611424 43..133 100 <- Minus