Clone FMO12628 Report

Search the DGRC for FMO12628

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:28
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6791-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12628.5prime Sequence

987 bp (876 high quality bases) assembled on 2013-01-17

> FMO12628.5prime
CAGTCGACATGGAGGGCATGGATCTGTGGACGTCGATGTTCTCGTCCGAC
TTCGAGGAGGGTGAGGCGGAGAGCGGGGTGGCGGAACTGGAGGACAGCGA
GCAGTACGGGAATGGCAATGATGACTTCCTAGGCGATACGGCGATCCTTG
ATTCAGGCGATGCCATCGATGACCTGCTGGATGCCGAAGAGGATGAGAGG
GAGGAGGAGGATGATTACGAAAAGAACTCCAAGGAGCCAAAGCAACCAGA
TCCCGACGATGATGCGCTCTTTGATTTTAATATGGAACCTATTGTAGATA
TAGCGGAGCCACAGCGTCCATCGTTGGCTCCTGCTGGACCCATGAGCCAA
CAAGTGCGTCCGCCAATGCAGCGACACTCATTCCCGGGAGCTGGGGGTCG
ACCCAGATTGGGTTCCGGACTGTCTGTACGACCCACCACCTCGCAGATCA
ATGCAACGGACGAGAACGGAGTGCCAATTAACTATGAGTTGGGCGTAGTC
TACATCTGCCCCGCCTGCGGTGGTGAATTCCGGCAACAGGACCACTGGAA
GCGGCACATGAACCACATTCACAAATACAACACTCTACGTGGCTTGAACT
TTACGCCGCTGGACAAGCTCTATCAGCGGTGCAGGGAGTGCAACAAGCGG
ATTGCCATGCACAGCCGGGAAAACCTGCTTAAGCATAAGTTCACGCACCT
GCCCTTCAGGTGCACCAAGTGCTACATCTGCAAACGGGAGTACAAATACA
GGCAAGATCTTATGGTTCATCTTCGCATGGTCCATTGCGATGAAGTCGTG
ACCATGATGCGGGAAGGTTTACAATGCGGCGGGGCGGAATACAACGGGTT
CGAGAGTCTCGCACCGAGCAGCTGCTGCGGAAAAAAACTTCCCGAGAAGA
ATGATGACCTTGGGGGAGGAAATCTGATCGCACAAAGAGTTCGAAAAGAC
CGTCTCCGACACCGGATGCCCTATTAGTACTTGTCTC

FMO12628.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6791-RA 3770 CG6791-RA 337..1290 9..970 4370 97.6 Plus
CG6791-RB 4338 CG6791-RB 337..1290 9..970 4370 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11589067..11589810 752..9 3720 100 Minus
3R 32079331 3R 11588853..11589015 915..750 545 92.8 Minus
Blast to na_te.dros performed on 2014-11-28 18:27:52 has no hits.

FMO12628.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:59 Download gff for FMO12628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6791-RB 333..1267 9..949 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:26 Download gff for FMO12628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6791-RB 337..1271 9..949 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:52 Download gff for FMO12628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6791-RB 337..1271 9..949 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:52 Download gff for FMO12628.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11589068..11589810 9..751 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:26 Download gff for FMO12628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7414790..7415532 9..751 100   Minus