FMO12633.5prime Sequence
1032 bp (832 high quality bases) assembled on 2013-01-17
> FMO12633.5prime
CAGTCGACATGGCCACGAACTGCGACTTCATCGAGCAGCCAGTGAAACAG
CAGCCGTTGGCCAATGCACCAGTCATGGGCGTCCAGGAGGATAAGGCACA
GGAGCCCAAGGAGTTGCCGGATGAGCCGGCGAAGCAGCCAGACGGCCAAC
CATACCAGCATTTCGCTGGCGAGGATAGCTTCGAATGCGCCTTCGAGTCG
ACCATGGACGACCTGGAGCAGGGTGTCCTGGATGGTTACGAGTCGGACTC
GGAGGCGAGTGCCAACGACCAGATCACTGATTCCGCCTCCTCTGGCAGCC
TGGGCCAATTGGCCCAGCAGCAGCAGCGCGAGGAGCGATTGAGGGGCTTG
CCGGGTCCACTTCATGGCCAGCATATCGATTCCGAGATGCTCAAGTGCAT
GCCGCGATCGAACTCCTTCGACTTTCACAGCAGCAGTGGCAGCAGCTCGG
ATGACGAGGATGATCCGGATGATGACGACGACGATCAAGTTCACCACAGC
CTGGGGCTCAGCCTCAGCGGGAAGTTTGTCAAGGTTGATCTCTATTCGGG
TCACCAGAGACCCGGCTATCTGTTACCTCCCTACATCGAACGACGCCGCT
TGTCGCAGTGCAAGGAGGAGGATGACGAGGATGAGGGCGACAGGACGCAG
CTGGGCGGCGGCTCATCATCCACGGGAGAGTCAACCAAATCCGAAAAAGC
TTCGAAAGGCGCCACCAAGGGCCACCCACGCCACAGGATGAGGCCTCCAA
GGAGAGTTTACGGATCTTGGAGCGTCTGCGGCAGCAGATTATGCAACAAG
ATCGATAGGATCATACGCGAAATATTGAGAGGAGAGTGAGGCACCGCCGC
CACAACCTCCTCGGCCGCCTCCCATTACCAGCCACGATTTCTAGCAAGGC
GGCTTAAGGCCTTACTGCACCACCAGGAATCGTTTGGGCCCTCTCTTTCC
CGGTCTATCTCCAGGTGGTCCACACAAGTGCCTTTGTCCACAGCTCGACG
TTATTGTGGGCAGAGAGAACCCGGTTTCCTGG
FMO12633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RF | 4769 | CG17299-RF | 407..1366 | 9..979 | 4180 | 96.3 | Plus |
| SNF4Agamma-RS | 4592 | CG17299-RS | 230..1189 | 9..979 | 4180 | 96.3 | Plus |
| SNF4Agamma-RR | 6292 | CG17299-RR | 348..1307 | 9..979 | 4180 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21173975..21174889 | 9..929 | 3940 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:18 has no hits.
FMO12633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:02 Download gff for
FMO12633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RF | 384..1286 | 1..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:42 Download gff for
FMO12633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RR | 341..1243 | 1..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:04 Download gff for
FMO12633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RR | 341..1243 | 1..910 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:04 Download gff for
FMO12633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21173968..21174870 | 1..910 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:42 Download gff for
FMO12633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16999690..17000592 | 1..910 | 97 | | Plus |
