FMO12635.5prime Sequence
554 bp (554 high quality bases) assembled on 2013-01-17
> FMO12635.5prime
CAGTCGACATGCTGTCCCTAAGCGATCCCAACAATGCTGGTGGCATTCCC
GACAAGGCGTGGCAGCCGCACTTCGTGACCCTGGAAACGAGCATGGGAGA
AATCACCGTGGAGCTGTACTGGAAACACGCGCCCAACACCTGCCGCAACT
TTGCCGAACTCTCGAGAAGGGGCTACTACAACAACGTGGTGTTCCACCGG
ATCATCAGGGACTTCATGATCCAGGGCGGCGATCCCACGGGCACTGGCCG
CGGAGGCGCCTCCATCTACGGATCGGAGTTCGCGGACGAGCTGCACGGCG
ACTTGAGGCACACGGGCGCGGGCATCCTCTCGATGGCCAACTCTGGACCG
GACACCAACGGGTCCCAGTTCTTCATCACGCTGGCGCCCACGCAGTGGCT
GGATGGCAAGCACACGATCTTCGGCAGGGTCTACACGGGCATGGAGGTGG
TCAAGCGGATCGGCATGGTGGAAACCGACAAGAACGATCGCCCCGTGGAT
CCCCTAAGGATCATCAAGGCCAAGGTGGAGAAGCTGGCAAGCTTTCTAGA
CCAT
FMO12635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..607 | 9..536 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542233..542679 | 536..90 | 2235 | 100 | Minus |
| 3L | 28110227 | 3L | 542770..542852 | 91..9 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:21 has no hits.
FMO12635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:56 Download gff for
FMO12635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 65..597 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:10 Download gff for
FMO12635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..612 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:37 Download gff for
FMO12635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..612 | 9..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:37 Download gff for
FMO12635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542228..542677 | 92..542 | 99 | <- | Minus |
| 3L | 542770..542852 | 9..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:10 Download gff for
FMO12635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542228..542677 | 92..542 | 99 | <- | Minus |
| arm_3L | 542770..542852 | 9..91 | 100 | | Minus |
