FMO12636.5prime Sequence
845 bp (825 high quality bases) assembled on 2013-01-17
> FMO12636.5prime
CAGTCGACATGATTGATCCAATCACCATGAAAGTGTTCGTTGTACTGGCT
CTGGCTTTGGCCGCTGTCTCCGCCGAGACTGTCCAGCAGGTTCATCCCAA
GGACCTGCCCAAGGACACCAAGATCAATGGCCGCATTGTGAACGGATATC
CAGCCTACGAGGGCAAGGCTCCCTACACCGTGGGTCTGGGCTTCAGCGGC
AACGGCGGCTGGTGGTGCGGTGGTTCTATCATCGCCCACGATTGGGTCCT
GACTGCTGCTCACTGCACCAACGGCGCCTCCCAGGTGACCATCTACTACG
GAGCCACCTGGCGCACCAACGCCCAGTTCACCCACACCGTCGGCAGCGGC
GACTTCATCCAGAACCACAACTGGCCCAACCAGAACGGCAACGACATCGC
CTTGATCCGCACCCCCCACGTGGACTTCTGGCACATGGTTAACAAGGTGG
AGCTGCCCAGCTTCAACGATCGCTACAACATGTACGACAACTATTGGGCC
GTCGCCTGCGGTTGGGGACTGACCACCGCCGGATCCCAGCCCGATTGGAT
GGAGTGCGTCGACCTGCAGATCATTAGCAACTCGGAATGCTCCCGCACCT
ACGGCACCCAGCCCGATGGCATCCTCTGTGTGTCCACCTCCGGCAGAAAG
TCCACCTGCTCCGGTGACTCCGGTGGCCCCCTGGTTCTCCACGAACGGTG
ACCGCCTGGTGAGTGTCACCTCCTGGGTTTCCGGCAACGGGTGCACCGCT
GGCCTGCCCTCCGGATTCCCCCGTGTTAACCACCCACTGGGACTGCATCC
GCCACCACTTCCGGCGTTGCTTACTACCGAAGCTTATCTAAACAT
FMO12636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon25Bi-RB | 866 | CG8867-RB | 6..819 | 11..827 | 3830 | 98.3 | Plus |
Jon25Biii-RA | 827 | CG8871-RA | 92..544 | 99..572 | 735 | 78.5 | Plus |
Jon99Ciii-RB | 1240 | CG31362-RB | 138..476 | 141..476 | 655 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4954326..4955139 | 827..11 | 3755 | 98.2 | Minus |
3R | 32079331 | 3R | 29922353..29922691 | 141..476 | 625 | 79.6 | Plus |
3R | 32079331 | 3R | 29924138..29924476 | 476..141 | 625 | 79.6 | Minus |
2L | 23513712 | 2L | 4950282..4950676 | 517..99 | 615 | 77.6 | Minus |
3R | 32079331 | 3R | 30489083..30489443 | 119..476 | 615 | 78.7 | Plus |
3R | 32079331 | 3R | 30487448..30487808 | 476..119 | 585 | 78.1 | Minus |
2R | 25286936 | 2R | 8691573..8691974 | 119..523 | 520 | 75.8 | Plus |
2L | 23513712 | 2L | 4952659..4953001 | 458..122 | 460 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:29 has no hits.
FMO12636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:57 Download gff for
FMO12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Bi-RA | 207..1040 | 1..840 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:14 Download gff for
FMO12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Bi-RB | 1..831 | 7..840 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:41 Download gff for
FMO12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Bi-RB | 1..831 | 7..840 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:41 Download gff for
FMO12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4954314..4955147 | 1..840 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:14 Download gff for
FMO12636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4954314..4955147 | 1..840 | 97 | | Minus |