FMO12639.5prime Sequence
1029 bp (914 high quality bases) assembled on 2013-01-17
> FMO12639.5prime
CAGTCGACATGGAAGACTATTGGGGTCTTAGCAGCACTACGGATATAAAT
TGCACTCAGCCCGCCATCGATGACTTCCCCCGAGACCTATTCTCGGAGGC
GCAAAGACAGTCTGGTGCTGTTGTACTTCATGTTATAGCCAGTTTATATT
TATTTGTAGCCTTAGCCGTAGTGTGTGATGAGTACTTTGTGCCAGCAGTT
GAGAAAATATGTGCAGCACTCAACATGTCCAATGATGTGGCGGGTGCCAC
TTTCATGGCCGCGGCCACCTCCGCCCCAGAATTATTTGTCAACGTGATAG
GAACCTTTATCACGGAGGGCGACATCGGAGTGGGCACGATTGTCGGATCG
GCGGTATTTAACATCCTGGCAGTGGCCGCGTGCTGCGGAATCGGAGCTGG
CATGACAATACCCTTGGACTGGTGGCCACTGACGCGGGACAGCATCGCAT
ACGGAGTTACAGTGGCCATTCTCATTTGTGTTATGCACGACGAGCGCGTC
GAGTGGTATGAGGCCCTCATCCTGGTCTCCCTGTATGCCGTCTATCTTGC
GGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAAAGGTGGCGTTA
AGCAGGCTCGTTCTCGCAGCCGGTCCTCCAACTGCAGCATACATACAAAG
AACAGCAATGAGAAGGAACCAGAGCTTGTGGAAAACCGCATTTGCCAGAA
CATGGCGAACATACAGCTAAACGGAGGACTTAACAAAGAGCAGCCAAGGC
CACAAGCACATCCGGAGCCGGTACCACCGCGATTTCGATAACCACCTCGA
CCATGACCACAACTTTGAGCACCACCCATAGTGCCGGAGGAGGAGGTGGA
GCAGTTGGTCTTTGTTCGGGAACAAGGCCATTGTGCAAGATGGCACCACT
AGAACGATGCCGAGGCATAATCTTCCCGTTGGTCGTATCATGTCTGGACG
AGGGCGTAAGGAGAGAAGGGAAACTCCTCGCCTCCCATACCCAAAGGAAT
AAGACTGCGCCTTTGCCCAGTTTATCCTG
FMO12639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RE | 2006 | CG2893-RE | 82..1090 | 9..1024 | 4495 | 97 | Plus |
| zyd-RH | 2341 | CG2893-RH | 329..1304 | 42..1024 | 4330 | 96.9 | Plus |
| zyd-RF | 2094 | CG2893-RF | 83..1057 | 43..1024 | 4325 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23032743..23032996 | 670..923 | 1035 | 97.3 | Plus |
| X | 23542271 | X | 23030420..23030613 | 215..408 | 955 | 99.5 | Plus |
| X | 23542271 | X | 23030666..23030856 | 404..594 | 955 | 100 | Plus |
| X | 23542271 | X | 23030189..23030363 | 42..216 | 875 | 100 | Plus |
| X | 23542271 | X | 23032518..23032600 | 590..672 | 415 | 100 | Plus |
| X | 23542271 | X | 23044008..23044153 | 224..369 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:51 has no hits.
FMO12639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:05 Download gff for
FMO12639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2893-RE | 71..984 | 1..917 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:01 Download gff for
FMO12639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RE | 77..990 | 1..917 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:20 Download gff for
FMO12639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RE | 77..990 | 1..917 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:20 Download gff for
FMO12639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23032746..23032990 | 673..917 | 97 | == | Plus |
| X | 23030422..23030609 | 217..404 | 100 | -> | Plus |
| X | 23030667..23030853 | 405..591 | 100 | -> | Plus |
| X | 23032520..23032600 | 592..672 | 100 | -> | Plus |
| X | 23023393..23023431 | 1..42 | 92 | -> | Plus |
| X | 23030190..23030363 | 43..216 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:01 Download gff for
FMO12639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 9008..9181 | 43..216 | 100 | -> | Plus |
| XHet | 2211..2249 | 1..42 | 92 | -> | Plus |
| XHet | 9240..9427 | 217..404 | 100 | -> | Plus |
| XHet | 9485..9671 | 405..591 | 100 | -> | Plus |
| XHet | 11338..11418 | 592..672 | 100 | -> | Plus |
| XHet | 11564..11808 | 673..917 | 97 | == | Plus |
