FMO12640.5prime Sequence
920 bp (802 high quality bases) assembled on 2013-01-17
> FMO12640.5prime
CAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTGGTATGGGC
GCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATGGGCATTGG
CATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAGTTCGGGAT
CTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGAGCACGGCG
GGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAACAATGGAAC
CCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTGCCTCGGGC
CACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCCTAGCCTTT
TTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCCATGCTGCT
CATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGCCTTTGCAC
CGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACTTCATCTAT
CTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAGCAGGAAAT
CGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGACGCGCCACC
AGTTCAAGAAGTGCTCAACTGCATGAAAGTGATACGTGCCCTGAAGTACC
AGGAGGTCTACGCCCAGGAGAAGTCACCAAGGTCGACAGCCTGTCGCTGG
TGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGCCCTGCACATT
GTGTTTCCCCATCAGTTCCTAGACTCGCCAGATTGCTTGGCGTCTCCGAC
CGATGACTACTTTCAGGTCCTCAATCATGGCAATGGAGAGTCCCGGTGCC
TGATCTGGCATCCGACAAGCTCAATTTGCCATTAATGGCGATCCTTCTTG
CGAACCGCTCTCGACACATT
FMO12640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bves-RD | 3428 | CG32513-RD | 715..1612 | 9..901 | 4065 | 97.6 | Plus |
| bves-RC | 3461 | CG32513-RC | 715..1612 | 9..901 | 4065 | 97.6 | Plus |
| bves-RB | 3789 | CG32513-RB | 715..1612 | 9..901 | 4065 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21061009..21061559 | 9..559 | 2755 | 100 | Plus |
| X | 23542271 | X | 21075364..21075522 | 557..713 | 680 | 98.1 | Plus |
| X | 23542271 | X | 21075592..21075696 | 714..818 | 400 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:57 has no hits.
FMO12640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:06 Download gff for
FMO12640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bves-RA | 827..1717 | 1..889 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:04 Download gff for
FMO12640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bves-RB | 708..1598 | 1..889 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:25 Download gff for
FMO12640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bves-RB | 708..1598 | 1..889 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:25 Download gff for
FMO12640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21061002..21061557 | 1..557 | 99 | -> | Plus |
| X | 21075365..21075522 | 558..713 | 98 | -> | Plus |
| X | 21075592..21075694 | 714..816 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:04 Download gff for
FMO12640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20932029..20932584 | 1..557 | 99 | -> | Plus |
| arm_X | 20946392..20946549 | 558..713 | 98 | -> | Plus |
| arm_X | 20946619..20946721 | 714..816 | 96 | -> | Plus |
