FMO12641.5prime Sequence
878 bp (819 high quality bases) assembled on 2013-01-17
> FMO12641.5prime
CAGTCGACATGCGTGGATTTATTATTTTTGCTGTCTTGGCTGTGGCTCGC
GCTGATGTAGGCGGCTATAACTATGGAGCTGGCATTGGATCAGGCGGATC
CATCTCGGGAGGCTCTCTGTCTGGAGGCTCCATCTCTGGAGGCTCGATCT
CAGGTGGCTCCATCTCAGGTGGCTCCATCTCAGGTGGCTCCATTTCTGGT
GGTTCCCTTTCTAGTGGTTCCCTGTCCGGGGGATCTTATTCCACTAACTA
CGCTCCTGTAAACACCGAATTTAACAAGGAGTTCTTCACCTACTCCGCTC
CCGAGGCCGATTTTGAGGATAATAAGAGTGTCAGTGATCTGGCTGCTACT
CTGAAGAAGAACCTCCGTGTGGTTTTCATCAGGGCCCCCGAGAATAAGGG
TCTGGAGAACGCCGCTCTGGCCTTGGCCAAGCAGGCTGCCGAGCAGCAGA
CCGCCATCTATGTCCTGACCAAACAGGGTGATCTGTCCAGCCTGGCCAAC
CAGCTGCAGAACCTGAACCATGTGAGCGCCAGCAAGCCGGAGGTGCATTT
CGTCAAGTACCGCACCCAGCAGGACGCCATCAATGCCCAGCGTACCATTC
AGCAGGAGTACGAGCGTCTGGGTGGAGACAGCACCTCCTACAACGGAGGC
GTGGCACCAGTCCTGGACTTTGCCACCAAAGTGCAGCAACAGCAAGAGCA
GCATCAGCTACAGCAACAGCAGCAGGTGCAGCTGATTGATGAGCGTCGGC
CTTCCAGCGGAAGTGTTAAGCGCCGAACTGGAGGATCCTTCAGCAGGATA
TATTCCAACACCAGCCGCAAGCGCCTAGTGCCACGTAACTGCCTGGGGAC
AAAGGTTAAAGGCAAGCCTTTCTAGACA
FMO12641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tb-RA | 1031 | CG5480-RA | 90..931 | 9..852 | 4035 | 98.7 | Plus |
TwdlK-RA | 840 | CG6460-RA | 360..599 | 363..602 | 360 | 77.7 | Plus |
TwdlM-RA | 1030 | CG5468-RA | 512..831 | 351..670 | 350 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26656605..26657431 | 24..852 | 3910 | 98.7 | Plus |
3R | 32079331 | 3R | 26628126..26628365 | 602..363 | 360 | 76.7 | Minus |
3R | 32079331 | 3R | 26619706..26620025 | 351..670 | 325 | 73.4 | Plus |
3R | 32079331 | 3R | 26630307..26630425 | 363..481 | 325 | 84.9 | Plus |
3R | 32079331 | 3R | 26632459..26632570 | 366..477 | 305 | 84.8 | Plus |
3R | 32079331 | 3R | 26622847..26622954 | 482..375 | 300 | 85.2 | Minus |
3R | 32079331 | 3R | 26634173..26634303 | 352..482 | 295 | 81.7 | Plus |
3R | 32079331 | 3R | 26626320..26626433 | 476..363 | 285 | 83.3 | Minus |
3R | 32079331 | 3R | 26624962..26625064 | 477..375 | 275 | 84.5 | Minus |
3R | 32079331 | 3R | 26640455..26640669 | 351..565 | 265 | 74.9 | Plus |
3R | 32079331 | 3R | 26656680..26656757 | 129..206 | 210 | 84.6 | Plus |
3R | 32079331 | 3R | 26656710..26656787 | 99..176 | 210 | 84.6 | Plus |
Blast to na_te.dros performed 2014-11-28 18:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1566 | 672..732 | 188 | 78.7 | Plus |
FMO12641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:07 Download gff for
FMO12641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tb-RA | 77..932 | 1..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:08 Download gff for
FMO12641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tb-RA | 82..937 | 1..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:29 Download gff for
FMO12641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tb-RA | 82..937 | 1..859 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:29 Download gff for
FMO12641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26656605..26657437 | 24..859 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:08 Download gff for
FMO12641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22482327..22483159 | 24..859 | 98 | | Plus |