Clone FMO12641 Report

Search the DGRC for FMO12641

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:41
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTb-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12641.5prime Sequence

878 bp (819 high quality bases) assembled on 2013-01-17

> FMO12641.5prime
CAGTCGACATGCGTGGATTTATTATTTTTGCTGTCTTGGCTGTGGCTCGC
GCTGATGTAGGCGGCTATAACTATGGAGCTGGCATTGGATCAGGCGGATC
CATCTCGGGAGGCTCTCTGTCTGGAGGCTCCATCTCTGGAGGCTCGATCT
CAGGTGGCTCCATCTCAGGTGGCTCCATCTCAGGTGGCTCCATTTCTGGT
GGTTCCCTTTCTAGTGGTTCCCTGTCCGGGGGATCTTATTCCACTAACTA
CGCTCCTGTAAACACCGAATTTAACAAGGAGTTCTTCACCTACTCCGCTC
CCGAGGCCGATTTTGAGGATAATAAGAGTGTCAGTGATCTGGCTGCTACT
CTGAAGAAGAACCTCCGTGTGGTTTTCATCAGGGCCCCCGAGAATAAGGG
TCTGGAGAACGCCGCTCTGGCCTTGGCCAAGCAGGCTGCCGAGCAGCAGA
CCGCCATCTATGTCCTGACCAAACAGGGTGATCTGTCCAGCCTGGCCAAC
CAGCTGCAGAACCTGAACCATGTGAGCGCCAGCAAGCCGGAGGTGCATTT
CGTCAAGTACCGCACCCAGCAGGACGCCATCAATGCCCAGCGTACCATTC
AGCAGGAGTACGAGCGTCTGGGTGGAGACAGCACCTCCTACAACGGAGGC
GTGGCACCAGTCCTGGACTTTGCCACCAAAGTGCAGCAACAGCAAGAGCA
GCATCAGCTACAGCAACAGCAGCAGGTGCAGCTGATTGATGAGCGTCGGC
CTTCCAGCGGAAGTGTTAAGCGCCGAACTGGAGGATCCTTCAGCAGGATA
TATTCCAACACCAGCCGCAAGCGCCTAGTGCCACGTAACTGCCTGGGGAC
AAAGGTTAAAGGCAAGCCTTTCTAGACA

FMO12641.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tb-RA 1031 CG5480-RA 90..931 9..852 4035 98.7 Plus
TwdlK-RA 840 CG6460-RA 360..599 363..602 360 77.7 Plus
TwdlM-RA 1030 CG5468-RA 512..831 351..670 350 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26656605..26657431 24..852 3910 98.7 Plus
3R 32079331 3R 26628126..26628365 602..363 360 76.7 Minus
3R 32079331 3R 26619706..26620025 351..670 325 73.4 Plus
3R 32079331 3R 26630307..26630425 363..481 325 84.9 Plus
3R 32079331 3R 26632459..26632570 366..477 305 84.8 Plus
3R 32079331 3R 26622847..26622954 482..375 300 85.2 Minus
3R 32079331 3R 26634173..26634303 352..482 295 81.7 Plus
3R 32079331 3R 26626320..26626433 476..363 285 83.3 Minus
3R 32079331 3R 26624962..26625064 477..375 275 84.5 Minus
3R 32079331 3R 26640455..26640669 351..565 265 74.9 Plus
3R 32079331 3R 26656680..26656757 129..206 210 84.6 Plus
3R 32079331 3R 26656710..26656787 99..176 210 84.6 Plus
Blast to na_te.dros performed 2014-11-28 18:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1506..1566 672..732 188 78.7 Plus

FMO12641.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:07 Download gff for FMO12641.5prime
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 77..932 1..859 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:08 Download gff for FMO12641.5prime
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 82..937 1..859 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:29 Download gff for FMO12641.5prime
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 82..937 1..859 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:29 Download gff for FMO12641.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26656605..26657437 24..859 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:08 Download gff for FMO12641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22482327..22483159 24..859 98   Plus