Clone FMO12642 Report

Search the DGRC for FMO12642

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:42
Vector:pMK33-CFH-BD
Associated Gene/Transcriptgeminin-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12642.5prime Sequence

602 bp (602 high quality bases) assembled on 2013-01-17

> FMO12642.5prime
CAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAGTCGAGACA
GAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACCCTGAAACC
CTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTCAGGGCGCG
CCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCCAAGTCGCG
CCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCGATTTCCAC
AAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCTTGGCAATG
CTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCGAACCCGGC
GAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCGCTGGAGGA
CTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGGGCTTGAGG
AGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGAATTTGGTG
GAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTGGAGGAGGA
CGACACTACGGGTGACGAGGACAAGGTCAACGCCGCAAGCTTTCTAGACC
AT

FMO12642.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
geminin-RB 939 CG3183-RB 173..748 9..584 2880 100 Plus
geminin-RA 1061 CG3183-RA 295..870 9..584 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6655654..6656229 584..9 2880 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:29:07 has no hits.

FMO12642.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:07 Download gff for FMO12642.5prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..803 9..591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:10 Download gff for FMO12642.5prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..803 9..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:31 Download gff for FMO12642.5prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 295..876 9..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:31 Download gff for FMO12642.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6655648..6656229 9..591 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:10 Download gff for FMO12642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2543153..2543734 9..591 99   Minus