FMO12643.5prime Sequence
956 bp (849 high quality bases) assembled on 2013-01-17
> FMO12643.5prime
CAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTCCCACAGTC
AGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGCAACGATAT
AACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAAGGCAAAGC
TGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCTGGAGTTAT
AGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTTGTGATGGT
TGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAGATCCTGGC
GCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAACTGGACAT
TCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTACTCAATGTC
TGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGCAGGTCTAA
TGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTCGCGTTGAG
CTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAGAAAGATAT
ACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGACTAATAAAC
TTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATCCTGAAGAG
GTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATTTTGAATCC
TCATAGTTCTACACATCTGGTGATGTGGCTGGTCTATCCGATTCCTTAGT
ATTATTTACGAATAATCTGTACAATTCACGCTTTGAATCGCTGATGAATA
ATAATATATGATCCCAGCATTTTTGTTAATCAGCAACGATCGGCGTGGGA
TAGATTGCTTAGGGATCATTTAAATGAGGGAAATGTGATTCTCATTCGTG
TTGCATGGATTGCCCTCCAAACGAGAGCTGGATATAAATATTTTCACCCA
TGTTAT
FMO12643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32243-RA | 1639 | CG32243-RA | 77..1018 | 9..943 | 4335 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4540295..4540654 | 695..336 | 1800 | 100 | Minus |
| 3L | 28110227 | 3L | 4540713..4540847 | 336..202 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 4540085..4540231 | 838..695 | 590 | 96.6 | Minus |
| 3L | 28110227 | 3L | 4541065..4541168 | 112..9 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 4540922..4541011 | 202..113 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:11 has no hits.
FMO12643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:08 Download gff for
FMO12643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32243-RA | 71..989 | 9..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:11 Download gff for
FMO12643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32243-RA | 77..995 | 9..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:32 Download gff for
FMO12643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32243-RA | 77..995 | 9..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:32 Download gff for
FMO12643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4540085..4540230 | 696..838 | 97 | <- | Minus |
| 3L | 4540295..4540653 | 337..695 | 100 | <- | Minus |
| 3L | 4540713..4540847 | 202..336 | 100 | <- | Minus |
| 3L | 4540923..4541011 | 113..201 | 100 | <- | Minus |
| 3L | 4541065..4541168 | 9..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:11 Download gff for
FMO12643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4540085..4540230 | 696..838 | 97 | <- | Minus |
| arm_3L | 4540295..4540653 | 337..695 | 100 | <- | Minus |
| arm_3L | 4540713..4540847 | 202..336 | 100 | <- | Minus |
| arm_3L | 4540923..4541011 | 113..201 | 100 | <- | Minus |
| arm_3L | 4541065..4541168 | 9..112 | 100 | | Minus |
