Clone FMO12644 Report

Search the DGRC for FMO12644

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCcp84Aa-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12644.5prime Sequence

641 bp (641 high quality bases) assembled on 2013-01-17

> FMO12644.5prime
CAGTCGACATGGCATTCAAGTTTGTCTTCGCCCTCGCCTTCGTCGCCGTG
GCCAGCGCCGGTTATGCCCCCATCGCCGCCCCACAGGTGTACCACGCTGC
CCCAGCGGTGGCCACCTACGCCCACGCCCCCGTGGCCGTCGCCCAGAAGG
TCGTGGTCAAGGCCGCCGAGGAGTACGACCCCCACCCCCAGTACCGCTTC
TCCTACGGAGTCGATGACAAGCTAACCGGTGACAACAAGGGACAGGTGGA
GGAGCGCGATGGAGATGTGGTACGCGGAGAGTACTCCCTGATCGACGCTG
ACGGCTACAAGAGGATCGTCCAGTACACCGCCGATCCCATCAACGGATTC
AACGCCGTTGTCAACCGTGAGCCCCTGGTCAAGGCCGTCGCCGTTGCCCC
CGTTGTGAAGACCGTCGCCGCTCCCGTTGCCCAATACGCCGCCCCTGCTG
TCGCCCACTACGCTGCTCCCGCTGTGGTCAAGACCGTGGCTCCAGTTGCC
CACTACGCTGCTCCTGCTGTGGTCAAGACTGTGGCCCCAGTGGCTCACTA
TGCTGCCCCCGCTGCATATGCCACCTATGCTGCTCCCACCCACTACGCCG
CCCCCGCTGTTGCCTACCACCCCGCAAGCTTTCTAGACCAT

FMO12644.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Aa-RA 765 CG2360-RA 64..678 9..623 3075 100 Plus
Ccp84Ab-RA 834 CG1252-RA 57..657 7..607 2885 98.7 Plus
Ccp84Ad-RA 735 CG2341-RA 136..621 84..563 1505 87.4 Plus
Ccp84Aa-RA 765 CG2360-RA 508..574 498..564 215 88.1 Plus
Ccp84Aa-RA 765 CG2360-RA 553..619 453..519 215 88.1 Plus
Ccp84Ab-RA 834 CG1252-RA 548..614 453..519 215 88.1 Plus
Ccp84Ab-RA 834 CG1252-RA 503..569 498..564 200 86.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6704212..6704816 19..623 3025 100 Plus
3R 32079331 3R 6702145..6702733 607..19 2840 98.8 Minus
3R 32079331 3R 6692928..6693413 84..563 1480 87.4 Plus
3R 32079331 3R 6689759..6690059 378..84 465 77.7 Minus
X 23542271 X 5804927..5805179 136..388 395 77.1 Plus
3R 32079331 3R 6691251..6691411 376..216 385 82.6 Minus
3R 32079331 3R 6693348..6693413 453..518 300 97 Plus
3R 32079331 3R 6687163..6687299 243..379 235 78.1 Plus
3R 32079331 3R 6702188..6702254 519..453 215 88.1 Minus
3R 32079331 3R 6704646..6704712 498..564 215 88.1 Plus
3R 32079331 3R 6704691..6704757 453..519 215 88.1 Plus
3R 32079331 3R 6702233..6702299 564..498 200 86.6 Minus
3R 32079331 3R 6693303..6693367 498..562 190 86.2 Plus
Blast to na_te.dros performed 2014-11-28 18:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 600..640 569..612 122 81.8 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 601..647 543..589 109 70.2 Plus

FMO12644.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:09 Download gff for FMO12644.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Aa-RA 66..680 9..623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:14 Download gff for FMO12644.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Aa-RA 64..678 9..623 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:34 Download gff for FMO12644.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Aa-RA 64..678 9..623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:34 Download gff for FMO12644.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6704214..6704816 21..623 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:14 Download gff for FMO12644.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2529936..2530538 21..623 100   Plus