FMO12644.5prime Sequence
641 bp (641 high quality bases) assembled on 2013-01-17
> FMO12644.5prime
CAGTCGACATGGCATTCAAGTTTGTCTTCGCCCTCGCCTTCGTCGCCGTG
GCCAGCGCCGGTTATGCCCCCATCGCCGCCCCACAGGTGTACCACGCTGC
CCCAGCGGTGGCCACCTACGCCCACGCCCCCGTGGCCGTCGCCCAGAAGG
TCGTGGTCAAGGCCGCCGAGGAGTACGACCCCCACCCCCAGTACCGCTTC
TCCTACGGAGTCGATGACAAGCTAACCGGTGACAACAAGGGACAGGTGGA
GGAGCGCGATGGAGATGTGGTACGCGGAGAGTACTCCCTGATCGACGCTG
ACGGCTACAAGAGGATCGTCCAGTACACCGCCGATCCCATCAACGGATTC
AACGCCGTTGTCAACCGTGAGCCCCTGGTCAAGGCCGTCGCCGTTGCCCC
CGTTGTGAAGACCGTCGCCGCTCCCGTTGCCCAATACGCCGCCCCTGCTG
TCGCCCACTACGCTGCTCCCGCTGTGGTCAAGACCGTGGCTCCAGTTGCC
CACTACGCTGCTCCTGCTGTGGTCAAGACTGTGGCCCCAGTGGCTCACTA
TGCTGCCCCCGCTGCATATGCCACCTATGCTGCTCCCACCCACTACGCCG
CCCCCGCTGTTGCCTACCACCCCGCAAGCTTTCTAGACCAT
FMO12644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Aa-RA | 765 | CG2360-RA | 64..678 | 9..623 | 3075 | 100 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 57..657 | 7..607 | 2885 | 98.7 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 136..621 | 84..563 | 1505 | 87.4 | Plus |
Ccp84Aa-RA | 765 | CG2360-RA | 508..574 | 498..564 | 215 | 88.1 | Plus |
Ccp84Aa-RA | 765 | CG2360-RA | 553..619 | 453..519 | 215 | 88.1 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 548..614 | 453..519 | 215 | 88.1 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 503..569 | 498..564 | 200 | 86.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6704212..6704816 | 19..623 | 3025 | 100 | Plus |
3R | 32079331 | 3R | 6702145..6702733 | 607..19 | 2840 | 98.8 | Minus |
3R | 32079331 | 3R | 6692928..6693413 | 84..563 | 1480 | 87.4 | Plus |
3R | 32079331 | 3R | 6689759..6690059 | 378..84 | 465 | 77.7 | Minus |
X | 23542271 | X | 5804927..5805179 | 136..388 | 395 | 77.1 | Plus |
3R | 32079331 | 3R | 6691251..6691411 | 376..216 | 385 | 82.6 | Minus |
3R | 32079331 | 3R | 6693348..6693413 | 453..518 | 300 | 97 | Plus |
3R | 32079331 | 3R | 6687163..6687299 | 243..379 | 235 | 78.1 | Plus |
3R | 32079331 | 3R | 6702188..6702254 | 519..453 | 215 | 88.1 | Minus |
3R | 32079331 | 3R | 6704646..6704712 | 498..564 | 215 | 88.1 | Plus |
3R | 32079331 | 3R | 6704691..6704757 | 453..519 | 215 | 88.1 | Plus |
3R | 32079331 | 3R | 6702233..6702299 | 564..498 | 200 | 86.6 | Minus |
3R | 32079331 | 3R | 6693303..6693367 | 498..562 | 190 | 86.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 600..640 | 569..612 | 122 | 81.8 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 601..647 | 543..589 | 109 | 70.2 | Plus |
FMO12644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:09 Download gff for
FMO12644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Aa-RA | 66..680 | 9..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:14 Download gff for
FMO12644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Aa-RA | 64..678 | 9..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:34 Download gff for
FMO12644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Aa-RA | 64..678 | 9..623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:34 Download gff for
FMO12644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6704214..6704816 | 21..623 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:14 Download gff for
FMO12644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2529936..2530538 | 21..623 | 100 | | Plus |