FMO12645.5prime Sequence
359 bp (359 high quality bases) assembled on 2013-01-17
> FMO12645.5prime
CAGTCGACATGCAGTCCTCCAGCATCTGTGTCCTGGCCATTTGCGCCTTC
GCTCTGCTCTCCACCATTAGGGCTGCTCCTCTGGACGACTCCCAACATGC
CACCATACTAAGATACGACAACGACAACATTGGCACTGATGGCTACAACT
TCGGCTACGAGACCAGTGATGGAGTTACCCGCCAGGAGCAGGCTGAGGTG
AAGAACGCCGGTACCGACCAGGAGGCGCTCAGTGTGCGCGGTTCCGTCAG
CTGGGTTGCTCCCGATGGCCAGACCTACACCCTGCACTACATTGCGGATG
AGAACGGTTTCCAGCCCCAGGGCGATCATCTGCCCCACAACGCAAGCTTT
CTAGACCAT
FMO12645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Av-RA | 642 | CG32405-RA | 112..446 | 7..341 | 1675 | 100 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 190..339 | 186..335 | 225 | 77.5 | Plus |
| Cpr65Ax2-RB | 732 | CG18777-RB | 189..338 | 186..335 | 225 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6139419..6139610 | 341..150 | 945 | 99.5 | Minus |
| 3L | 28110227 | 3L | 6139716..6139863 | 154..7 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 6147581..6147730 | 335..186 | 225 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6150452..6150601 | 335..186 | 225 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6145138..6145289 | 184..335 | 205 | 75.7 | Plus |
| 3L | 28110227 | 3L | 6152287..6152379 | 335..243 | 195 | 80.6 | Minus |
| 3L | 28110227 | 3L | 6133172..6133243 | 335..264 | 180 | 83.3 | Minus |
| 3L | 28110227 | 3L | 6134853..6134924 | 335..264 | 180 | 83.3 | Minus |
| 2R | 25286936 | 2R | 12404317..12404355 | 297..335 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:29:25 has no hits.
FMO12645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:09 Download gff for
FMO12645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Av-RA | 104..455 | 1..351 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:19 Download gff for
FMO12645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Av-RA | 105..456 | 1..351 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:39 Download gff for
FMO12645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Av-RA | 105..456 | 1..351 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:39 Download gff for
FMO12645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6139716..6139867 | 1..154 | 97 | | Minus |
| 3L | 6139409..6139605 | 155..351 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:19 Download gff for
FMO12645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6132509..6132705 | 155..351 | 97 | <- | Minus |
| arm_3L | 6132816..6132967 | 1..154 | 97 | | Minus |
