FMO12646.5prime Sequence
994 bp (854 high quality bases) assembled on 2013-01-17
> FMO12646.5prime
CAGTCGACATGTACGCGTTAACAATACTTTTACCAATTTTGCAACTATTT
GCAATCGTTCGAGCGGAATCGGGAGAATTCGAGAAACTCCTGGTGCCCGT
GAGCCACGGAAGCGCAGAGCAAAGGAGCGGAGCACGGAGCAACGAGACTA
CTGGACACTCGGTGGCCGCCCGCTCCTACTACGACGTGGTGCAAAACGCC
GGACAGACGGGCTGCTCCGTGGGCACCGAGTGCACCCCGCTCCACGACTG
CACCGCCCTGATCTACGAGGTTGCCCGGAGTTGCTACTACGGCGACAAGT
CGCTCTACTGCGGCGGATCCAGCGAGGAGCTGCCCTACGTCTGCTGCCCC
AGCAGTCCGTTGGAGAAGAACCAGGTGTGCGGCAAGTCACTGGTCCAGGG
GCACTTCTACAAGGGACTGGGCTCCTATCCCTTTGTCGCGCGCATCGGCT
TCAAACATGTCAACACTGGAGCTTTTGCTTATCCGTGTGCCGGAGCCGTA
ATTGCCCGCCGGGTCATCCTCACGGCCGCCCATTGCGCTCTGGCCAAGGC
CGATGGACACCGACTGTCATCGGTGCGCGTGGGCGAGTACGATACTAGTA
GCGATCCGGACTGCGCCAACACCGGATTCTGTGCACCGCGGTCGGTCAAC
CACGCCATCAGCCATGTGATCGTGCATCCCGACTACAAGCAGGGCCAGTA
TCACCATGACATTGCTCTGCTGGTGCTTAAAACGCCGCTAAACTATTCGG
TGGCTACACAGCCCATCTGCCTGCAGAAGACACGCGCCAACCCTGGTTGT
TGGGCAAACGGGCTTACCAATCGGCCCGGTGGGGGCAAGATGGTCCCCCG
TTCAAGGGTCCGCCAGTGCGGAAAATGTCCGCATCTGGGACGGTGCCGCC
TGAACCGCTGGGAACCGGGGTCCTGGCGCAAAATACGGGGCTCCCACGGG
GGTCCCCTGGAAAACACCCCCACTCTCCTCCAAGGTTTCATTGG
FMO12646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17572-RA | 1344 | CG17572-RA | 126..1015 | 9..913 | 4025 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19073308..19073683 | 456..81 | 1880 | 100 | Minus |
| 2L | 23513712 | 2L | 19072831..19073015 | 750..566 | 925 | 100 | Minus |
| 2L | 23513712 | 2L | 19073104..19073214 | 567..457 | 555 | 100 | Minus |
| 2L | 23513712 | 2L | 19073952..19074024 | 81..9 | 365 | 100 | Minus |
| 2L | 23513712 | 2L | 19071684..19071726 | 792..750 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:28:25 has no hits.
FMO12646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:02 Download gff for
FMO12646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17572-RA | 118..957 | 2..851 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:46 Download gff for
FMO12646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17572-RA | 121..960 | 2..851 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:08 Download gff for
FMO12646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17572-RA | 121..960 | 2..851 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:08 Download gff for
FMO12646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19072831..19073015 | 566..750 | 100 | <- | Minus |
| 2L | 19073106..19073214 | 457..565 | 100 | <- | Minus |
| 2L | 19073308..19073682 | 82..456 | 100 | <- | Minus |
| 2L | 19073952..19074029 | 2..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:46 Download gff for
FMO12646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19072831..19073015 | 566..750 | 100 | <- | Minus |
| arm_2L | 19073106..19073214 | 457..565 | 100 | <- | Minus |
| arm_2L | 19073308..19073682 | 82..456 | 100 | <- | Minus |
| arm_2L | 19073952..19074029 | 2..81 | 95 | | Minus |
