FMO12647.5prime Sequence
918 bp (797 high quality bases) assembled on 2013-01-17
> FMO12647.5prime
CAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTACACGAGGA
TCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGTCCAAATTT
AATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGTTCCCATAG
AAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCACGTTGGAG
GAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGCGTTCGAAC
GTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTCCTTCGAAT
CGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGGGTTACGAG
AGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTGCTGCCCAT
TATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGGCATGTTGT
ATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAGGACACATG
AAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAAGCCATCTG
TGTGACCGACGGCCAACGTATCCTGGGATTACGTGACCTGAGAGCCAATG
GCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCCTGGCCCGG
AATTCCGCCGAGCATGTTATTGCCAATTTGCCTGGATGTGGCACAAATAA
CAAATCGCTACACGAGATCCCCTGTACATCGGTCTAAGGATGAGCGTTAA
AGGGCGATGAGTACGTGTGCTTTTGTGATGAGTTCATGAGCAGTCGTAAC
CCACCTTGGAGAATCCAAACGCTCTTCCACTTTCGAGGACTTGCGACACC
CCAATGCTTATATGTTTCTCGAAATAGTATCAGCAATGCTTACTGGCCAT
TCTAATGAGCAAAAATTT
FMO12647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-1-RD | 4198 | CG7964-RD | 210..1108 | 9..908 | 3890 | 96.7 | Plus |
| Menl-2-RE | 4198 | CG7969-RE | 210..1108 | 9..908 | 3890 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16418273..16418966 | 869..178 | 2755 | 96.3 | Minus |
| 2R | 25286936 | 2R | 16419018..16419189 | 180..9 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:28:31 has no hits.
FMO12647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:03 Download gff for
FMO12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RC | 202..992 | 1..788 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:49 Download gff for
FMO12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RC | 202..992 | 1..788 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:10 Download gff for
FMO12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-2-RE | 202..992 | 1..788 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:10 Download gff for
FMO12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16418353..16418964 | 180..788 | 98 | <- | Minus |
| 2R | 16419019..16419197 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:49 Download gff for
FMO12647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12305858..12306469 | 180..788 | 98 | <- | Minus |
| arm_2R | 12306524..12306702 | 1..179 | 97 | | Minus |
