FMO12652.5prime Sequence
413 bp (413 high quality bases) assembled on 2013-01-17
> FMO12652.5prime
CAGTCGACATGTCTCTATCGCCAGCCAGTGGCATTGGTCGTTTCTACGCC
AAGTCGGCAAAAATCATACGTTTCGTACGCCTGGGATGCACCAATCGGCC
TTTTTATCACATTGTCGTCATGGAGAGGCGCAAGAACCAGCACCAGCCTG
TCATCGAGCAGGTGGGCTCCTTTGATCCCCTGCCCAACGATTACAACGAA
CGACTGGTGGCCCTGAACACGGAGAGAATTCGCTATTGGCTGGGCAAAGG
TGCACACTTGTCCACGCCGGCTGCAGAACTCCTGGGAATTGCCGGACTAC
TGCCCATCCACCCGCGCACCTACATGACCGCCTGGCGGAACCGGAGGACA
GCTGCTGAAGCGGAGGCGTCGCCAGAAAAGGCGGAATCAACCGCAGCAAG
CTTTCTAGACCAT
FMO12652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS16-RA | 546 | CG8338-RA | 112..498 | 9..395 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14173034..14173305 | 395..124 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 14173369..14173485 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:57 has no hits.
FMO12652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:13 Download gff for
FMO12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 45..441 | 1..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:38 Download gff for
FMO12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 105..501 | 1..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:00 Download gff for
FMO12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 105..501 | 1..399 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:00 Download gff for
FMO12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14173030..14173303 | 126..399 | 99 | <- | Minus |
| 2R | 14173369..14173491 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:38 Download gff for
FMO12652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10060874..10060996 | 1..125 | 96 | | Minus |
| arm_2R | 10060535..10060808 | 126..399 | 99 | <- | Minus |
