Clone FMO12653 Report

Search the DGRC for FMO12653

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG2663-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12653.5prime Sequence

978 bp (853 high quality bases) assembled on 2013-01-17

> FMO12653.5prime
CAGTCGACATGAGTGCACATACAGTTGCGATGATGATGCTACACCCCACA
CCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCGGAGGACCC
CGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCTGGAGACAC
AGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGACCTTCCTG
CGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTGGACATGTA
CTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCGGGACATCA
ATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCCCGACTCTC
CCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGGGGTATCGA
TTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGTGGCCCTGA
TGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCGCCGGCGAC
ATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTCGCCAAGTT
CTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGAGGCCTATC
CCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGCTGGTGGAC
ACTATCTTCAACTTTGTGAAGCCGTTCGTGAAAGGAGAAGATCCGCAGCC
GCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGTTGCCCCG
TGACCTCCTGCCCAACGAGTACGGCGCCAAGGCCGGCGGCGTCGTCGAGC
TGAACCAGTTGGTGAAGCAAAAGCTGGTCGACAACACCCAGTGGTTCCAG
GAACCAGGAAGAGAAGAAGCGAACGAGTCCCTTCCCCCCGGCGGCCCTCA
AAGACCAAGCGAATAACTCTCTTCGGTATGGAGGGACTCTTCTCGCGAAT
GATAAATTTCGACGCAGATCTTTCTTAG

FMO12653.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-RC 1645 CG2663-RC 469..1389 8..935 4225 97.7 Plus
CG2663-RA 1287 CG2663-RA 132..1031 29..935 4120 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5400887..5401443 893..335 2465 97.7 Minus
3R 32079331 3R 5401506..5401812 335..29 1535 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:30:04 has no hits.

FMO12653.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:13 Download gff for FMO12653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 456..1362 1..912 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:42 Download gff for FMO12653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 456..1362 1..912 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:03 Download gff for FMO12653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RC 462..1368 1..912 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:03 Download gff for FMO12653.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5400871..5401443 335..912 97 <- Minus
3R 5401507..5401811 30..334 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:42 Download gff for FMO12653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1226593..1227165 335..912 97 <- Minus
arm_3R 1227229..1227533 30..334 100 <- Minus