FMO12653.5prime Sequence
978 bp (853 high quality bases) assembled on 2013-01-17
> FMO12653.5prime
CAGTCGACATGAGTGCACATACAGTTGCGATGATGATGCTACACCCCACA
CCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCGGAGGACCC
CGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCTGGAGACAC
AGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGACCTTCCTG
CGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTGGACATGTA
CTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCGGGACATCA
ATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCCCGACTCTC
CCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGGGGTATCGA
TTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGTGGCCCTGA
TGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCGCCGGCGAC
ATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTCGCCAAGTT
CTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGAGGCCTATC
CCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGCTGGTGGAC
ACTATCTTCAACTTTGTGAAGCCGTTCGTGAAAGGAGAAGATCCGCAGCC
GCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGTTGCCCCG
TGACCTCCTGCCCAACGAGTACGGCGCCAAGGCCGGCGGCGTCGTCGAGC
TGAACCAGTTGGTGAAGCAAAAGCTGGTCGACAACACCCAGTGGTTCCAG
GAACCAGGAAGAGAAGAAGCGAACGAGTCCCTTCCCCCCGGCGGCCCTCA
AAGACCAAGCGAATAACTCTCTTCGGTATGGAGGGACTCTTCTCGCGAAT
GATAAATTTCGACGCAGATCTTTCTTAG
FMO12653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-RC | 1645 | CG2663-RC | 469..1389 | 8..935 | 4225 | 97.7 | Plus |
CG2663-RA | 1287 | CG2663-RA | 132..1031 | 29..935 | 4120 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5400887..5401443 | 893..335 | 2465 | 97.7 | Minus |
3R | 32079331 | 3R | 5401506..5401812 | 335..29 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:04 has no hits.
FMO12653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:13 Download gff for
FMO12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 456..1362 | 1..912 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:42 Download gff for
FMO12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 456..1362 | 1..912 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:03 Download gff for
FMO12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RC | 462..1368 | 1..912 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:03 Download gff for
FMO12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5400871..5401443 | 335..912 | 97 | <- | Minus |
3R | 5401507..5401811 | 30..334 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:42 Download gff for
FMO12653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1226593..1227165 | 335..912 | 97 | <- | Minus |
arm_3R | 1227229..1227533 | 30..334 | 100 | <- | Minus |