FMO12654.5prime Sequence
618 bp (618 high quality bases) assembled on 2013-01-17
> FMO12654.5prime
CAGTCGACATGGCCGCCTACGCTGCTTTCAAACACGTTGAGCTTTACAAT
GTTGGCAAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGCGGATCGAG
CGACATCTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATC
GCATGGCGTCCAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAAC
AACGGTGATGCACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCG
GCTGTTTGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGA
AGAGCAGCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAG
CTGCTGACCACCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTC
GGCCTCGTCTTCGGTGTCGTCCTTTTTCGAGAACCTCAAGATGAACAGTG
GCTCGAGATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGTCGTA
GCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGCACTCCGGT
GATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGGCCTGTGGG
CAAGCTTTTCTAGACCAT
FMO12654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RC | 1581 | CG31363-RC | 206..796 | 9..599 | 2895 | 99.3 | Plus |
| Jupiter-RD | 1517 | CG31363-RD | 204..732 | 71..599 | 2585 | 99.2 | Plus |
| Jupiter-RA | 1535 | CG31363-RA | 204..750 | 71..599 | 2395 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11592367..11592625 | 462..204 | 1235 | 98.5 | Minus |
| 3R | 32079331 | 3R | 11591171..11591310 | 599..460 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 11593631..11593768 | 206..69 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 11604141..11604203 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:10 has no hits.
FMO12654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:14 Download gff for
FMO12654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 198..796 | 1..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:47 Download gff for
FMO12654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 201..799 | 1..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:06 Download gff for
FMO12654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 201..799 | 1..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:06 Download gff for
FMO12654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11591168..11591307 | 463..603 | 98 | <- | Minus |
| 3R | 11592367..11592624 | 205..462 | 98 | <- | Minus |
| 3R | 11593633..11593766 | 71..204 | 100 | <- | Minus |
| 3R | 11604142..11604208 | 1..70 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:47 Download gff for
FMO12654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7416890..7417029 | 463..603 | 98 | <- | Minus |
| arm_3R | 7418089..7418346 | 205..462 | 98 | <- | Minus |
| arm_3R | 7419355..7419488 | 71..204 | 100 | <- | Minus |
| arm_3R | 7429864..7429930 | 1..70 | 94 | | Minus |
