FMO12655.5prime Sequence
584 bp (584 high quality bases) assembled on 2013-01-17
> FMO12655.5prime
CAGTCGACATGCAGCCCCTGAAGCGCTTCACACAATGCGGCAGTCTGACC
ATGCTCTTCGGCATCTTCATCATCCTCTTCGGGGTCAGCTCCACGGCTCT
GACCACTTTTGGCAAGACCAACAATCAGCCGCCTCCCACGCACGTCCCAA
TTGTTAAAGGACGAGAGTGCAGTGCCCACGATGATTGCACGGCGATAGAT
CGCACCAGCTGCGTCAAGGATCCCAATGACTACAAGCTGCGTTGCCTATG
CGGCGACGACTCGCCTCCTTCGGCTGGCAGCTGTCCAGATGTCCTGAAAG
GCCTGCGTCACAAGTGCAACAGCAACAACGACTGCGAGGATGGAATGGTG
TGCCAGTACGAGAACAGCAACCGCACCATCGGAGTGGCCAAGTTCATGTC
CAGCAAGACCAAGCTGTGTCTCTGCGTCAACGACAACGGATATGTGGAGG
ACATCCTGCACGACATCTGCAGTGGAGCTAATCTTCAGGGCCTGGTCAGC
TTCTTGGTCTCGATCTGCTCACTTCTGGCGCCCTTTTTGGTATCCGCCCA
CATGCGAAAGCATTTCGCAAGCTTTCTAGACCAT
FMO12655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sosie-RA | 1738 | CG13636-RA | 393..950 | 9..566 | 2775 | 99.8 | Plus |
| sosie-RC | 635 | CG13636-RC | 86..499 | 153..566 | 2055 | 99.8 | Plus |
| sosie-RB | 1528 | CG13636-RB | 328..740 | 154..566 | 2050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24839311..24839489 | 299..477 | 880 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24838050..24838198 | 153..301 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 24837073..24837221 | 9..157 | 730 | 99.3 | Plus |
| 3R | 32079331 | 3R | 24839610..24839700 | 476..566 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:30:17 has no hits.
FMO12655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:15 Download gff for
FMO12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13636-RA | 394..951 | 9..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:51 Download gff for
FMO12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sosie-RA | 393..950 | 9..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:10 Download gff for
FMO12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sosie-RA | 393..950 | 9..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:10 Download gff for
FMO12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24837073..24837217 | 9..153 | 100 | -> | Plus |
| 3R | 24838051..24838197 | 154..300 | 100 | -> | Plus |
| 3R | 24839313..24839489 | 301..477 | 99 | -> | Plus |
| 3R | 24839612..24839700 | 478..566 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:51 Download gff for
FMO12655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20663773..20663919 | 154..300 | 100 | -> | Plus |
| arm_3R | 20662795..20662939 | 9..153 | 100 | -> | Plus |
| arm_3R | 20665035..20665211 | 301..477 | 99 | -> | Plus |
| arm_3R | 20665334..20665422 | 478..566 | 100 | | Plus |
