FMO12656.5prime Sequence
862 bp (851 high quality bases) assembled on 2013-01-17
> FMO12656.5prime
CAGTCGACATGAGCAAGTTCTCGCTCTTCAATGGCAACGATGAGGACGAG
CACGAAACGGAGCAGAAATACGCACACCTTATGAATCTGGGAAATGCGAG
TCACTCGGTGTCGGAAAATAGTTCTGGGAAAGCGAGTCGCTGCAAGTGGA
CCAGCGCAAAGGTGGAGACCTTTCTGGAAATCATTCACCAACTTAAACTG
CAAGCTGCTCTTCGAAGGCCGCGAAGCAATGCAAAGGTGTTTCGTATGGT
GTCCAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGTCCAAAGCATCTGA
GAGTCAAGTTCCATCAGATGCGGCGTCAGTATGCGAGAGCTCGGAATGGC
GGCGAACCATTCGAGCACTTTGAGGCGGTGCACGAGTTGATGCAGGGAGA
AGATGTATCTGATCTGGATGAAGAGGCGCTAGAGAGTGACAGCGATATGG
AGGCCGACGAGGACCAGTCCGGCATGATCTCAGAAACCGAAGGGGACGAT
GCTTTGGATGCCTCAGGATCTTCAGTTAACATCGTCGCCCGCTGCAAGTG
GGCAGAGGGCGAAGTGGACCTCCTCCTAGACCTGATCCACACACTTGGAC
TGCGAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGTCTTCAAGCTGCTG
TCCAAGGAGATGGCAAAACGCAACTGCCACAAGGGTGCTGAGAAGCTGCG
CATCAAGTTCCAGCAGCTGCGGCGATTGTACACAAGGTCAAGAACGGCAC
GGGGAAACGTTCGAGCATTTTGAGGCGATGCGACTGGTCCTGATCCCACC
GAAGAGGAGCGGCCGCAGATGCTGAAGCGGAGCCCATTCTGAGCAGCCGC
AGGCGGATAGTG
FMO12656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 121..976 | 9..862 | 4080 | 99 | Plus |
| CG10494-RB | 2160 | CG10494-RB | 102..961 | 9..862 | 4030 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21518457..21518870 | 498..85 | 2070 | 100 | Minus |
| 2R | 25286936 | 2R | 21518045..21518398 | 847..498 | 1510 | 97.7 | Minus |
| 2R | 25286936 | 2R | 21518930..21519005 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:23 has no hits.
FMO12656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:16 Download gff for
FMO12656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 93..957 | 1..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:57 Download gff for
FMO12656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 112..976 | 1..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:13 Download gff for
FMO12656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 112..976 | 1..862 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:13 Download gff for
FMO12656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21518032..21518397 | 499..862 | 97 | <- | Minus |
| 2R | 21518457..21518870 | 85..498 | 100 | <- | Minus |
| 2R | 21518930..21519014 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:57 Download gff for
FMO12656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17405537..17405902 | 499..862 | 97 | <- | Minus |
| arm_2R | 17405962..17406375 | 85..498 | 100 | <- | Minus |
| arm_2R | 17406435..17406519 | 1..84 | 95 | | Minus |
