Clone FMO12658 Report

Search the DGRC for FMO12658

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:58
Vector:pMK33-CFH-BD
Associated Gene/TranscriptmRpS21-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12658.5prime Sequence

287 bp (287 high quality bases) assembled on 2013-01-17

> FMO12658.5prime
CAGTCGACATGAGACACGTGCAGTTTCTGGCCCGCACCGTTCTGGTGCAA
AACAATAATGTGGAGGAGGCGTGTCGTCTGTTAAATCGCGTCTTGGGAAA
AGAAGAACTGCTCGACCAATTTCGCCGCACGCGATTCTACGAAAAGCCGT
ATCAGGTTCGTCGTCGCATCAACTTCGAGAAATGCAAGGCCATTTACAAC
GAGGACATGAACCGAAAAATTCAGTTCGTACTGCGCAAAAATCGCGCCGA
ACCTTTTCCTGGATGCAGTGCAAGCTTTCTAGACCAT

FMO12658.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS21-RB 475 CG32854-RB 97..361 5..269 1310 99.6 Plus
mRpS21-RA 422 CG32854-RA 97..361 5..269 1310 99.6 Plus
CG8870-RA 1535 CG8870-RA 1416..1531 269..154 580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13381558..13381713 160..5 765 99.4 Minus
3R 32079331 3R 13381390..13381505 269..154 580 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:29:31 has no hits.

FMO12658.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:10 Download gff for FMO12658.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS21-RA 76..350 1..276 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:24 Download gff for FMO12658.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS21-RA 93..367 1..276 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:43 Download gff for FMO12658.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS21-RA 93..367 1..276 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:43 Download gff for FMO12658.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13381384..13381503 156..276 97 <- Minus
3R 13381563..13381714 1..155 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:24 Download gff for FMO12658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9207106..9207225 156..276 97 <- Minus
arm_3R 9207285..9207436 1..155 97   Minus