Clone FMO12665 Report

Search the DGRC for FMO12665

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:65
Vector:pMK33-CFH-BD
Associated Gene/TranscriptDh31-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12665.5prime Sequence

374 bp (374 high quality bases) assembled on 2013-01-17

> FMO12665.5prime
CAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTC
TTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATGCCCAGCCA
ATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGAGGAGGTGC
CCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCACCATCATA
CGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGACTTTGGCTT
GGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCATGGGTCTGG
CTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGATCCGAGACC
GATGTCGCAAGCTTTCTAGACCAT

FMO12665.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RA 1292 CG13094-RA 143..490 9..356 1740 100 Plus
Dh31-RC 1295 CG13094-RC 143..493 9..356 1700 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8492670..8492802 356..224 665 100 Minus
2L 23513712 2L 8492967..8493094 223..96 640 100 Minus
2L 23513712 2L 8493747..8493835 97..9 445 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:22:44 has no hits.

FMO12665.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:28 Download gff for FMO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 9..361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:17 Download gff for FMO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 9..361 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:06 Download gff for FMO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 9..361 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:06 Download gff for FMO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8492666..8492802 224..361 98 <- Minus
2L 8492967..8493092 98..223 100 <- Minus
2L 8493747..8493835 9..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:17 Download gff for FMO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8492666..8492802 224..361 98 <- Minus
arm_2L 8492967..8493092 98..223 100 <- Minus
arm_2L 8493747..8493835 9..97 100   Minus