FMO12666.5prime Sequence
419 bp (419 high quality bases) assembled on 2013-01-17
> FMO12666.5prime
CAGTCGACATGTCTCATGGCGAGCGAAAAGGCCGCCTCAATGTGGTCAAG
TTTCTCGAACTGGGTTTTGCGGTAGCGTGTCTGGTGCTCCACTTCTACAG
CTTCAACGATCGCGATATAATGACTTCGTTCCTGGCCACTGGCACCTTCA
CGGGCTACATCATAGTGGTCATCGGGGTCTTTGCAGGCGTTCTGATGCGG
GCACCCATTCACAAGCGCATCGATATATTCTTCAGCGTCCTGGGCTGCAC
CTTGTTCGTGGCCAGCGGTGTGTTCATCATTGAGGCCTGGGAGTTCTCCT
TCCGCACCCGAACTCGGGATCTCGCGCTCATCAAGGCCTCGCTGTCCATC
GTCAATGGGGTGCTATTCGGATTCGATGCGGTGTTCACATTTCGCGACAA
GGCAAGCTTTCTAGACCAT
FMO12666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15449-RA | 765 | CG15449-RA | 168..560 | 9..401 | 1965 | 100 | Plus |
| Ntf-2-RE | 3078 | CG1740-RE | 1398..1618 | 401..181 | 1105 | 100 | Minus |
| Ntf-2-RE | 3078 | CG1740-RE | 1646..1771 | 187..62 | 630 | 100 | Minus |
| Ntf-2-RE | 3078 | CG1740-RE | 1995..2049 | 63..9 | 275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21039719..21039939 | 401..181 | 1105 | 100 | Minus |
| X | 23542271 | X | 21040035..21040160 | 187..62 | 630 | 100 | Minus |
| X | 23542271 | X | 21040384..21040438 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:53 has no hits.
FMO12666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:28 Download gff for
FMO12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15449-RA | 162..570 | 1..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:21 Download gff for
FMO12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15449-RA | 162..570 | 1..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:11 Download gff for
FMO12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15449-RA | 162..570 | 1..411 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:11 Download gff for
FMO12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21039709..21039933 | 187..411 | 98 | <- | Minus |
| X | 21040036..21040159 | 63..186 | 100 | <- | Minus |
| X | 21040385..21040444 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:21 Download gff for
FMO12666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20911412..20911471 | 1..62 | 93 | | Minus |
| arm_X | 20910736..20910960 | 187..411 | 98 | <- | Minus |
| arm_X | 20911063..20911186 | 63..186 | 100 | <- | Minus |
