FMO12671.5prime Sequence
995 bp (882 high quality bases) assembled on 2013-01-17
> FMO12671.5prime
CAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCGAGCGAGAG
GTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGACCTGCTCAA
GGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGCCAAAGCAG
GAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGACTGGAACTA
GATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTCATGCTAAA
AACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGAAACGAATA
TCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCGAGCTGGAG
CAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCTGAGGCCTA
CGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCTCAGGCCTC
GAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAGCTCACACC
GAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCTGCAGTTCG
CGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGGTTTTTTCA
AATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTAAAATTTTG
CTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATAAAGGATTT
GCAAAGTGTTTCAGAAAAGTTATTCGATATATATAATGATATTAAGGACC
CAAAATCCGACGAGTTCAATGCCCTCAACCATGGCGATGGTTGGTCTAAC
AACATTATGTTCCAGTACAACGACAAAACGAGATTTAAATTACCTACTTT
GTGATCTTCACTGCCGGAAGTGGGGATTCAGTGCGCAGATTTGTATTATT
TCCTGCTTTCATCGACCAGCCTGGACATTAAAACGGACTAATTCGACTCA
TTTTCGCTCTGGTTCTCTACCACTCGAAGTTGGTGGAAACACCCT
FMO12671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-RA | 1367 | CG10560-RA | 46..1027 | 9..993 | 4500 | 97.8 | Plus |
| CG10553-RA | 1442 | CG10553-RA | 44..627 | 15..598 | 885 | 78 | Plus |
| CG10559-RB | 1435 | CG10559-RB | 319..523 | 333..537 | 245 | 74.6 | Plus |
| CG10553-RA | 1442 | CG10553-RA | 806..966 | 777..934 | 200 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25319305..25319790 | 701..216 | 2430 | 100 | Minus |
| 3R | 32079331 | 3R | 25319849..25320056 | 216..9 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 25318992..25319242 | 948..701 | 865 | 92.4 | Minus |
| 3R | 32079331 | 3R | 25317396..25317696 | 598..298 | 605 | 80.1 | Minus |
| 3R | 32079331 | 3R | 25317878..25318068 | 205..15 | 325 | 78 | Minus |
| 3R | 32079331 | 3R | 25315538..25315742 | 537..333 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:44 has no hits.
FMO12671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:08:18 Download gff for
FMO12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 24..988 | 9..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:10 Download gff for
FMO12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 46..1010 | 9..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:23 Download gff for
FMO12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 46..1010 | 9..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:23 Download gff for
FMO12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25318967..25319241 | 702..977 | 92 | <- | Minus |
| 3R | 25319305..25319789 | 217..701 | 100 | <- | Minus |
| 3R | 25319849..25320056 | 9..216 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:10 Download gff for
FMO12671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21144689..21144963 | 702..977 | 92 | <- | Minus |
| arm_3R | 21145027..21145511 | 217..701 | 100 | <- | Minus |
| arm_3R | 21145571..21145778 | 9..216 | 100 | | Minus |
