FMO12675.5prime Sequence
680 bp (680 high quality bases) assembled on 2013-01-17
> FMO12675.5prime
CAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATTGCAAAAAT
AAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGATCCAAAAAT
TCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGATTTTCCCC
TGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTAGTGAAGCT
TTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAGTACTGCGG
TAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCACGTCATTC
GCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTCAAACTGGA
ATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGAGTTCGTAT
TGGTCAACCCATTATGTCTGTCCTCTCTAGCGATCGTTACAAGGCTCAAG
TTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGACGTCAAAAG
ATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGTGAGCGTTA
TGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTGCAATGTGA
AATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAGCTCAGCGT
GATGTTTATGCTGCAAGCTTTCTAGACCAT
FMO12675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL10-RE | 1224 | CG17521-RE | 37..697 | 2..662 | 3275 | 99.7 | Plus |
| RpL10-RD | 789 | CG17521-RD | 48..708 | 2..662 | 3275 | 99.7 | Plus |
| RpL10-RC | 778 | CG17521-RC | 37..697 | 2..662 | 3275 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23094905..23095212 | 338..31 | 1540 | 100 | Minus |
| 3L | 28110227 | 3L | 23093717..23093880 | 662..499 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 23094684..23094849 | 500..335 | 815 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:34 has no hits.
FMO12675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:34 Download gff for
FMO12675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Qm-RC | 34..698 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:46 Download gff for
FMO12675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10-RC | 36..700 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:37 Download gff for
FMO12675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10-RC | 36..700 | 1..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:37 Download gff for
FMO12675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23093714..23093878 | 501..666 | 98 | <- | Minus |
| 3L | 23094684..23094846 | 338..500 | 99 | <- | Minus |
| 3L | 23094906..23095211 | 32..337 | 100 | <- | Minus |
| 3L | 23095275..23095304 | 1..31 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:46 Download gff for
FMO12675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23086814..23086978 | 501..666 | 98 | <- | Minus |
| arm_3L | 23087784..23087946 | 338..500 | 99 | <- | Minus |
| arm_3L | 23088006..23088311 | 32..337 | 100 | <- | Minus |
| arm_3L | 23088375..23088404 | 1..31 | 93 | | Minus |
