Clone FMO12676 Report

Search the DGRC for FMO12676

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:126
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSec61beta-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12676.5prime Sequence

326 bp (326 high quality bases) assembled on 2013-01-17

> FMO12676.5prime
CAGTCGACATGCCCGCTCCAGCCAGTTCAACGTCCGTGGGCAGCGGATCG
CGCTCCCCCAGCAAATTGTCGGCGCCACGTAGCGCCGGATCCGGAGGCGG
CAGCACCCTGAAGCAGCGCAAGACCACCACCAGCACCACAGCGGCCCGGA
GCCGTGCACCCGGCGGAGCCGGAACTGGTGGCATGTGGCGTTTCTACACG
GACGACTCGCCCGGTATCAAAGTTGGTCCCGTACCCGTGCTGGTCATGTC
GCTGCTGTTCATCGCTTCCGTCTTCATGCTGCACATTTGGGGCAAATACA
ATCGTTCTGCAAGCTTTCTAGACCAT

FMO12676.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Sec61beta-RA 792 CG10130-RA 130..429 9..308 1485 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14618958..14619170 11..223 1065 100 Plus
2R 25286936 2R 14619234..14619318 224..308 410 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 18:23:41 has no hits.

FMO12676.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:34 Download gff for FMO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec61beta-RA 174..478 9..314 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:50 Download gff for FMO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec61beta-RA 130..434 9..314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:42 Download gff for FMO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec61beta-RA 130..434 9..314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:42 Download gff for FMO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14618949..14619170 1..223 98 -> Plus
2R 14619234..14619323 224..314 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:50 Download gff for FMO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10506454..10506675 1..223 98 -> Plus
arm_2R 10506739..10506828 224..314 96   Plus