FMO12678.5prime Sequence
976 bp (854 high quality bases) assembled on 2013-01-17
> FMO12678.5prime
CAGTCGACATGGCGAACTTGGAATGGGTGTGCGTGCCGCGATGCTACGAG
GTCCGGAAGAATTGCCTGACTGGGCAGGCCACGCTGGAGCATCCCCTAAA
GCAGCGGACGGTGACGGTGGTGGACAGCAATCCCTTGAGCCGAGCTCTAG
AGGGCACAGATCCGCTCTCGCAGTTTGCACGCCAAGATGATGAGCTCAAC
GATCCGCTCAGTCAAATGGTCAGCGAATTCGATCTCAAGTCGAAGCGTCG
TGAACGGGACCGAACGGAGCCCGAGGACAACACACTGCAGTGGAGCAGCC
GACGACTAGGCATCCTCAACCGCTTTACAACCAATGAGAAGCTATCGCTG
TCTACCAGCTTTCTGGTGTCATCTGGTAGCCTGGATGGCGGCAACGAAAG
CATTAAAGCACAAACGGTGGTGGCCGACAAGACAAAGTTTCGCTTGGAGC
AGTTAGACCACTTCGACGATGGCAGCATGCGTCACATGATGGATCTTACT
CAGCAGGAGTACATTCAGCGGTTTGAGCAACTCAAGCAGGAGCTGATCCA
GTCCTGGCACAACGATCAGCGAGTAAAAGCGTTGAAGATAGCCATACAGT
GTGCCAAAATGCTAGCGGACACCACTGTGCTGCAATTCTATCCGAGTCAG
TACGTTCTTATCACTGATATACTGGATGTTTTTGGAAAATTGGTATACGA
ACGACTGCGTGCTAAGCCTCTGGAGATCCTGCCGCATCGGCGGCCACATT
AGAGCGGGAACGGGAAGCTGCCCGGGATACGTGCCAGATTGTTTTATAGA
TCGCCTCGATTCGTGAGTTACTGCCGCGTTTTACTTGGAGCTCGTCAATA
TTCAAGTGCTACGAGTTCCTGTCATCATCGCGCCGAGGAGATATGAGCGC
ATTTGGCAACGTTGAACCATCAACTGAGAGTATAGCTGATCCCTTTGGTA
TCGAGCCATGCCCGCTGTCTACTGGT
FMO12678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8202-RA | 3092 | CG8202-RA | 43..1009 | 9..973 | 4500 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8732766..8733333 | 403..967 | 2270 | 97.2 | Plus |
| 3R | 32079331 | 3R | 8732544..8732719 | 231..406 | 865 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8732369..8732484 | 116..231 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 8732215..8732310 | 25..120 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:23:53 has no hits.
FMO12678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:36 Download gff for
FMO12678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8202-RA | 28..1007 | 1..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:58 Download gff for
FMO12678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8202-RA | 34..1013 | 1..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:50 Download gff for
FMO12678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8202-RA | 34..1013 | 1..976 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:50 Download gff for
FMO12678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8732216..8732306 | 26..116 | 100 | -> | Plus |
| 3R | 8732370..8732483 | 117..230 | 100 | -> | Plus |
| 3R | 8732544..8732715 | 231..402 | 100 | -> | Plus |
| 3R | 8732766..8733342 | 403..976 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:58 Download gff for
FMO12678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4557938..4558028 | 26..116 | 100 | -> | Plus |
| arm_3R | 4558092..4558205 | 117..230 | 100 | -> | Plus |
| arm_3R | 4558266..4558437 | 231..402 | 100 | -> | Plus |
| arm_3R | 4558488..4559064 | 403..976 | 97 | | Plus |
