FMO12679.5prime Sequence
996 bp (897 high quality bases) assembled on 2013-01-17
> FMO12679.5prime
CAGTCGACATGTTCTGCAGCAATACAAACTCTAAAACGGCAGCGCAGCCA
AAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGAGCCAACCG
GCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTACAGAAGAGC
GCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAAAGGTAGAG
GAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAATTCAACAG
TATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATCTTTGTATT
TGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGGCTGAAGTA
TTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGAAAATTCTT
TGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAAACTTAACA
TTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATGCCTGTCTA
AACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTTGAAAATAA
GATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTGGTTTGTGC
AACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTCCTGTAGAG
ACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAATATACGGA
AACTATTCAAGAGTTTACAGATGTACCTACGCCAAGTAAACCAGGTTGTC
ACTTAAAGTATATCAATGGTCGCATATTTTATGGAGCCAAGATCCTATTG
CCTGCCAAACTGTCTTTTATGGCTGCCAGTATTTACAATGAACAATCTCA
TGACGTGCCACCCCGTCTCCAAGTGACTCGATAAACTGCGCCCAATGGTA
TTCGTGCCCAAGGAGAAAAAACTTCTTAGAATGGCTTCCAAAAAACAATG
CGACAGATGGCGCGAATCGGAGATGAGGAAAATGATGCACCCGCCC
FMO12679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 923..1896 | 9..988 | 4615 | 98.5 | Plus |
| mute-RC | 5751 | CG34415-RC | 3334..4307 | 9..988 | 4615 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16950152..16950481 | 631..302 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 16949740..16950092 | 988..630 | 1360 | 95.8 | Minus |
| 2R | 25286936 | 2R | 16950742..16950901 | 168..9 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 16950541..16950674 | 302..169 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:59 has no hits.
FMO12679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:37 Download gff for
FMO12679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3333..4261 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:01 Download gff for
FMO12679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3334..4262 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:54 Download gff for
FMO12679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3334..4262 | 9..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:54 Download gff for
FMO12679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16949777..16950090 | 632..948 | 96 | <- | Minus |
| 2R | 16950152..16950480 | 303..631 | 100 | <- | Minus |
| 2R | 16950541..16950674 | 169..302 | 100 | <- | Minus |
| 2R | 16950742..16950901 | 9..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:01 Download gff for
FMO12679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12837657..12837985 | 303..631 | 100 | <- | Minus |
| arm_2R | 12838046..12838179 | 169..302 | 100 | <- | Minus |
| arm_2R | 12838247..12838406 | 9..168 | 100 | | Minus |
| arm_2R | 12837282..12837595 | 632..948 | 96 | <- | Minus |
