FMO12681.5prime Sequence
907 bp (856 high quality bases) assembled on 2013-01-17
> FMO12681.5prime
CAGTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAACCATGGAC
ATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGCAAACACTC
CGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTTTGCCCTTA
CGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGGTGGCCATG
ACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAATTGGTCGGA
GAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTATGTGATCA
CCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCAAAGTGATG
ATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTGACACCCAT
TTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACGAGTGGTGG
AAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGATCCTCTCC
CAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGTGCCTACTC
GGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGGAGTGATTG
CAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTGGAGGAATC
GGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGATCGCCACA
AGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAACTGATCGAGATGTCGCA
GGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGAGCAGTTGCCCA
CGCCCTGCCTGACCTCCTTCACTTCACCTGTTTCCTCGTCCTATTCGTCT
CACACCTCGGGAGCACACTGGGGGTTCCGGACACTGGTCCCCGAAATCCC
CAACTCG
FMO12681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-RC | 3536 | CG15096-RC | 1804..2699 | 8..902 | 4170 | 98 | Plus |
| CG15096-RA | 2060 | CG15096-RA | 328..1223 | 8..902 | 4170 | 98 | Plus |
| CG15096-RB | 1783 | CG15096-RB | 140..946 | 97..902 | 3725 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18809306..18809975 | 902..234 | 2935 | 96.9 | Minus |
| 2R | 25286936 | 2R | 18810041..18810178 | 234..97 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 18814604..18814692 | 96..8 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:11 has no hits.
FMO12681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:38 Download gff for
FMO12681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RA | 311..1188 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:10 Download gff for
FMO12681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RA | 321..1198 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:01 Download gff for
FMO12681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RA | 321..1198 | 1..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:01 Download gff for
FMO12681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18809331..18809975 | 234..877 | 97 | <- | Minus |
| 2R | 18810042..18810178 | 97..233 | 100 | <- | Minus |
| 2R | 18814604..18814698 | 1..96 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:10 Download gff for
FMO12681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14702109..14702203 | 1..96 | 96 | | Minus |
| arm_2R | 14696836..14697480 | 234..877 | 97 | <- | Minus |
| arm_2R | 14697547..14697683 | 97..233 | 100 | <- | Minus |
