FMO12688.5prime Sequence
386 bp (386 high quality bases) assembled on 2013-01-17
> FMO12688.5prime
CAGTCGACATGGCTGCTGCACCCAAGGATATTGAGAAGCCCCATGTCGGC
GATTCTGCCTCTGTGCACCGCATCCGCATCACCCTGACATCCAGGAACGT
GCGTTCGCTGGAGAATGTGTGCCGCGACCTGATCAACGGTGCAAAGAACC
AGAACTTGCGCGTCAAGGGCCCCGTGCGCATGCCGACCAAGACCCTTCGC
ATCACCACCCGTAAGACTCCTTGTGGTGAGGGTTCCAAGACCTGGGATCG
CTTCCAGATGAGAATCCACAAGCGCATCATCGACTTGCACTCGCCCTCTG
AGATCGTCAAGAAGATTACCTCCATCAACATCGAGCCCGGCGTAGAGGTT
GAGGTCACCATCGCCAACGCAAGCTTTCTAGACCAT
FMO12688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS20-RA | 564 | CG15693-RA | 91..450 | 9..368 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20822417..20822574 | 11..168 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 20823126..20823242 | 252..368 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 20822800..20822891 | 166..257 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:24:35 has no hits.
FMO12688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:41 Download gff for
FMO12688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS20-RA | 93..456 | 9..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:27 Download gff for
FMO12688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS20-RA | 91..454 | 9..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:12 Download gff for
FMO12688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS20-RA | 91..454 | 9..373 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:12 Download gff for
FMO12688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20822407..20822573 | 1..167 | 97 | -> | Plus |
| 3R | 20822802..20822891 | 168..257 | 100 | -> | Plus |
| 3R | 20823132..20823246 | 258..373 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:27 Download gff for
FMO12688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16648854..16648968 | 258..373 | 98 | | Plus |
| arm_3R | 16648129..16648295 | 1..167 | 97 | -> | Plus |
| arm_3R | 16648524..16648613 | 168..257 | 100 | -> | Plus |
