FMO12692.5prime Sequence
993 bp (885 high quality bases) assembled on 2013-01-17
> FMO12692.5prime
CAGTCGACATGAAGGAGTGGCTGAAGATCTCCTGCCTCCTCTGTGTCTTT
GGCTGCATCCGCGAGATCCGTCCGTCGGAGCCCTACGTCACGGAGTACCT
GCTGGGTCCCTGGCGGAATATCACGGAGCAGCAGCTAACGCACGATGTTT
ACCCAGTGGGAACCTATTCCTACCTGGTGCAGTTGGTCTTTGTATTTCTC
ATAACAGATTTTCTCAGATACAAGCCGCTGATCATCACAATTGGAGCTGC
GGGTGTGATAATATGGAGCATGCTCATCTGGACCACCAGCTTGCTGTCGC
TTCAGATCCTGGAGTTCTTCTTCGGCACTTACATGGCCGCAGAGGTGGCC
TACTATACGTACATCTATGCCAAAGTGGACAAGAAATACTATGCCAGAGT
GACCTCCCACACCCGAGCAGCCATGTTTGCAGGCAAACTGGTTTCCGGCA
TCACTTCCCAACTTATGCTCAATCTGGAGCTGATGAACTACAAGGAGCTT
AACTATATAACGCTGGGCACTCAGATTATAGCCATGCTTTGGGCCTTTGG
CCTGCCCCGCGTGGATAGGAGTCTTTACTTTCATCGGGAGCAGTTGTCCA
TTACGGAGCCGCAGACTCAGCTACCCGGGGTGGGAAACCTGGCTGAGATG
GATCAGCAGCAGGAGAATACTCAGAAGCAGCCAGGAGCACTGAGCCTTCT
TTGGCTACATTTTCGGAATGCATACACCAATCCGCGAGTCGTTCAGTGAG
TCTGTGGTACGCCATTGGACTGGCTGGGTTACCTGCAGGTCACTTACTAC
GTTCAGGTTCTGTGAAAGTGATCGAACCGGAGCCTGTTATTGCGTGAACG
GCGCCGTTGATGCTGTCCTGACCAGCTCCGGCTGCTCCTAGTGGCTTTGG
GCCGCTGGTTATCCTGCCCACCCGGAAAGGCTCAAACCGGCAGCATTCCT
TCTGGATTCTTGGGCATCTCTGGTTCCCCCTGGAAGGCGAAGT
FMO12692.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6574-RA | 1962 | CG6574-RA | 376..1317 | 9..954 | 4360 | 98 | Plus |
| CG14694-RA | 1369 | CG14694-RA | 344..445 | 342..443 | 255 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10861274..10861666 | 913..520 | 1595 | 97 | Minus |
| 3R | 32079331 | 3R | 10861725..10862030 | 519..214 | 1530 | 100 | Minus |
| 3R | 32079331 | 3R | 10862488..10862613 | 134..9 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 10862344..10862429 | 217..132 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 10859305..10859406 | 443..342 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:01 has no hits.
FMO12692.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:43 Download gff for
FMO12692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6574-RA | 370..1302 | 4..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:43 Download gff for
FMO12692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6574-RA | 370..1302 | 4..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:26 Download gff for
FMO12692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6574-RA | 370..1302 | 4..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:26 Download gff for
FMO12692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10861251..10861666 | 520..939 | 96 | <- | Minus |
| 3R | 10861725..10862026 | 218..519 | 100 | <- | Minus |
| 3R | 10862344..10862426 | 135..217 | 100 | <- | Minus |
| 3R | 10862488..10862619 | 4..134 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:43 Download gff for
FMO12692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6686973..6687388 | 520..939 | 96 | <- | Minus |
| arm_3R | 6687447..6687748 | 218..519 | 100 | <- | Minus |
| arm_3R | 6688066..6688148 | 135..217 | 100 | <- | Minus |
| arm_3R | 6688210..6688341 | 4..134 | 98 | | Minus |
